Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2lbs.std.txt Дата изменения: Fri Oct 5 04:35:11 2012 Дата индексирования: Sun Feb 3 23:37:07 2013 Кодировка:

REM -------------------------------------------------------------------- 2LBS
REM 2LBS
REM STRIDE: Knowledge-based secondary structure assignment 2LBS
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2LBS
REM 2LBS
REM Residue accessible surface area calculation 2LBS
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2LBS
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2LBS
REM 2LBS
REM ------------------------ General information ----------------------- 2LBS
REM 2LBS
HDR HYDROLASE/RNA 06-APR-11 2LBS 2LBS
CMP MOL_ID: 1; 2LBS
CMP MOLECULE: RNA (32-MER); 2LBS
CMP CHAIN: A; 2LBS
CMP ENGINEERED: YES; 2LBS
CMP MOL_ID: 2; 2LBS
CMP MOLECULE: RIBONUCLEASE 3; 2LBS
CMP CHAIN: B; 2LBS
CMP FRAGMENT: DRBM DOMAIN RESIDUES 366-453; 2LBS
CMP SYNONYM: RIBONUCLEASE III, RNASE III; 2LBS
CMP EC: 3.1.26.3; 2LBS
CMP ENGINEERED: YES 2LBS
SRC MOL_ID: 1; 2LBS
SRC SYNTHETIC: YES; 2LBS
SRC MOL_ID: 2; 2LBS
SRC ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; 2LBS
SRC ORGANISM_COMMON: YEAST; 2LBS
SRC ORGANISM_TAXID: 4932; 2LBS
SRC GENE: RNT1, YM9408.01C, YM9959.21, YMR239C; 2LBS
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2LBS
SRC EXPRESSION_SYSTEM_TAXID: 511693; 2LBS
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 2LBS
SRC EXPRESSION_SYSTEM_VECTOR: PGEX-2T 2LBS
AUT Z.WANG,E.HARTMAN,K.ROY,G.CHANFREAU,J.FEIGON 2LBS
REM 2LBS
REM -------------------- Secondary structure summary ------------------- 2LBS
REM 2LBS
CHN /data/npidb/pdb/pdb_new/all/pdb2lbs.pdb B 2LBS
REM 2LBS
REM . . . . . 2LBS
SEQ 1 GSLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLG 50 2LBS
STR HHHHHHHHHHTTTTTTT EEEEEE TTTTT EEEEEEETTTEEEE 2LBS
REM 2LBS
REM . . . . 2LBS
SEQ 51 TGVGRNIKIAGIRAAENALRDKKMLDFYAKQRAAIPRSES 90 2LBS
STR EEEE HHHHHHHHHHHHHH HHHHHHHHHHHHH 2LBS
REM 2LBS
REM 2LBS
REM 2LBS
LOC AlphaHelix ASP 367 B SER 376 B 2LBS
LOC AlphaHelix ILE 420 B ARG 433 B 2LBS
LOC AlphaHelix LYS 435 B ALA 447 B 2LBS
LOC Strand LEU 385 B VAL 390 B 2LBS
LOC Strand SER 400 B VAL 406 B 2LBS
LOC Strand THR 410 B GLY 417 B 2LBS
LOC TurnIV SER 376 B GLY 379 B 2LBS
LOC TurnIV TYR 380 B LEU 383 B 2LBS
LOC TurnI THR 394 B ASP 397 B 2LBS
LOC TurnVIII ALA 395 B PRO 398 B 2LBS
LOC TurnIV VAL 406 B GLY 409 B 2LBS
REM 2LBS
REM --------------- Detailed secondary structure assignment------------- 2LBS
REM 2LBS
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2LBS
ASG GLY B 364 1 C Coil 360.00 -124.21 98.4 2LBS
ASG SER B 365 2 C Coil 37.91 64.74 114.0 2LBS
ASG LEU B 366 3 C Coil -148.27 150.01 83.7 2LBS
ASG ASP B 367 4 H AlphaHelix -59.73 -70.47 79.0 2LBS
ASG MET B 368 5 H AlphaHelix -32.40 -54.64 106.9 2LBS
ASG ASN B 369 6 H AlphaHelix -58.60 -42.81 68.7 2LBS
ASG ALA B 370 7 H AlphaHelix -67.05 -63.41 0.2 2LBS
ASG LYS B 371 8 H AlphaHelix -46.20 -37.66 96.3 2LBS
ASG ARG B 372 9 H AlphaHelix -66.03 -46.15 120.5 2LBS
ASG GLN B 373 10 H AlphaHelix -63.19 -56.25 27.3 2LBS
ASG LEU B 374 11 H AlphaHelix -66.60 -58.06 4.2 2LBS
ASG TYR B 375 12 H AlphaHelix -74.03 -48.16 157.8 2LBS
ASG SER B 376 13 H AlphaHelix -73.18 -55.64 86.5 2LBS
ASG LEU B 377 14 T Turn -66.95 -43.82 63.6 2LBS
ASG ILE B 378 15 T Turn -115.23 165.12 11.5 2LBS
ASG GLY B 379 16 T Turn 95.83 124.53 36.7 2LBS
ASG TYR B 380 17 T Turn -150.86 -170.48 37.9 2LBS
ASG ALA B 381 18 T Turn -54.71 -45.34 107.1 2LBS
ASG SER B 382 19 T Turn -80.33 -162.05 62.8 2LBS
ASG LEU B 383 20 T Turn 36.84 -154.37 52.4 2LBS
ASG ARG B 384 21 C Coil 155.72 108.98 195.9 2LBS
ASG LEU B 385 22 E Strand -108.00 141.37 41.9 2LBS
ASG HIS B 386 23 E Strand -123.99 178.49 78.5 2LBS
ASG TYR B 387 24 E Strand -133.09 114.29 65.7 2LBS
ASG VAL B 388 25 E Strand -102.90 124.46 40.9 2LBS
ASG THR B 389 26 E Strand -103.57 119.44 94.7 2LBS
ASG VAL B 390 27 E Strand -137.26 131.44 79.3 2LBS
ASG LYS B 391 28 C Coil -179.07 164.64 78.9 2LBS
ASG LYS B 392 29 C Coil -104.74 81.32 137.9 2LBS
ASG PRO B 393 30 C Coil -64.37 122.89 105.0 2LBS
ASG THR B 394 31 T Turn -116.65 152.11 70.1 2LBS
ASG ALA B 395 32 T Turn -52.17 -51.07 114.1 2LBS
ASG VAL B 396 33 T Turn -90.64 -44.96 131.0 2LBS
ASG ASP B 397 34 T Turn -105.38 103.27 86.3 2LBS
ASG PRO B 398 35 T Turn -100.65 150.60 51.3 2LBS
ASG ASN B 399 36 C Coil -150.93 146.11 48.2 2LBS
ASG SER B 400 37 E Strand -153.50 110.03 7.0 2LBS
ASG ILE B 401 38 E Strand -101.61 144.50 31.9 2LBS
ASG VAL B 402 39 E Strand -132.62 118.93 9.6 2LBS
ASG GLU B 403 40 E Strand -92.04 110.40 73.7 2LBS
ASG CYS B 404 41 E Strand -95.66 93.62 5.0 2LBS
ASG ARG B 405 42 E Strand -112.49 175.19 87.0 2LBS
ASG VAL B 406 43 E Strand -128.51 151.09 5.0 2LBS
ASG GLY B 407 44 T Turn -27.41 -57.02 34.4 2LBS
ASG ASP B 408 45 T Turn -59.27 -1.58 128.7 2LBS
ASG GLY B 409 46 T Turn 82.51 49.89 46.2 2LBS
ASG THR B 410 47 E Strand -122.29 115.10 43.6 2LBS
ASG VAL B 411 48 E Strand -100.68 124.98 65.6 2LBS
ASG LEU B 412 49 E Strand -128.63 -42.03 57.5 2LBS
ASG GLY B 413 50 E Strand -93.12 92.12 0.0 2LBS
ASG THR B 414 51 E Strand -110.91 101.48 53.1 2LBS
ASG GLY B 415 52 E Strand -108.44 111.91 0.0 2LBS
ASG VAL B 416 53 E Strand -113.16 102.70 57.3 2LBS
ASG GLY B 417 54 E Strand -109.56 -163.17 11.3 2LBS
ASG ARG B 418 55 C Coil -87.38 -39.32 169.8 2LBS
ASG ASN B 419 56 C Coil -117.48 -174.43 58.9 2LBS
ASG ILE B 420 57 H AlphaHelix -69.51 -44.61 96.4 2LBS
ASG LYS B 421 58 H AlphaHelix -60.37 -63.48 132.1 2LBS
ASG ILE B 422 59 H AlphaHelix -48.74 -28.91 51.5 2LBS
ASG ALA B 423 60 H AlphaHelix -65.29 -52.02 0.4 2LBS
ASG GLY B 424 61 H AlphaHelix -56.03 -55.66 32.3 2LBS
ASG ILE B 425 62 H AlphaHelix -69.74 -27.24 43.1 2LBS
ASG ARG B 426 63 H AlphaHelix -72.45 -45.15 131.4 2LBS
ASG ALA B 427 64 H AlphaHelix -60.48 -49.77 0.0 2LBS
ASG ALA B 428 65 H AlphaHelix -54.39 -51.27 8.6 2LBS
ASG GLU B 429 66 H AlphaHelix -56.85 -41.06 23.4 2LBS
ASG ASN B 430 67 H AlphaHelix -52.30 -49.33 29.1 2LBS
ASG ALA B 431 68 H AlphaHelix -66.58 -47.51 6.1 2LBS
ASG LEU B 432 69 H AlphaHelix -50.46 -16.70 49.4 2LBS
ASG ARG B 433 70 H AlphaHelix -75.70 -15.94 190.4 2LBS
ASG ASP B 434 71 C Coil -103.12 44.73 65.9 2LBS
ASG LYS B 435 72 H AlphaHelix -41.12 -54.44 130.1 2LBS
ASG LYS B 436 73 H AlphaHelix -49.93 -30.03 147.3 2LBS
ASG MET B 437 74 H AlphaHelix -76.30 -50.90 28.3 2LBS
ASG LEU B 438 75 H AlphaHelix -51.36 -47.84 3.4 2LBS
ASG ASP B 439 76 H AlphaHelix -60.03 -53.30 102.2 2LBS
ASG PHE B 440 77 H AlphaHelix -47.10 -42.68 111.9 2LBS
ASG TYR B 441 78 H AlphaHelix -66.53 -43.30 28.6 2LBS
ASG ALA B 442 79 H AlphaHelix -53.45 -55.82 21.5 2LBS
ASG LYS B 443 80 H AlphaHelix -59.78 -27.61 123.0 2LBS
ASG GLN B 444 81 H AlphaHelix -67.48 -57.70 53.6 2LBS
ASG ARG B 445 82 H AlphaHelix -54.60 -27.19 112.3 2LBS
ASG ALA B 446 83 H AlphaHelix -87.10 -48.42 73.2 2LBS
ASG ALA B 447 84 H AlphaHelix -54.57 -34.65 71.9 2LBS
ASG ILE B 448 85 C Coil -35.59 135.03 35.5 2LBS
ASG PRO B 449 86 C Coil -78.62 10.30 112.0 2LBS
ASG ARG B 450 87 C Coil 57.30 57.34 223.1 2LBS
ASG SER B 451 88 C Coil -172.08 174.55 74.9 2LBS
ASG GLU B 452 89 C Coil -113.81 -74.25 197.5 2LBS
ASG SER B 453 90 C Coil -93.57 360.00 177.1 2LBS