Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2ltt.std.txt Дата изменения: Wed Jan 23 18:15:48 2013 Дата индексирования: Sun Feb 3 23:37:37 2013 Кодировка:

REM -------------------------------------------------------------------- 2LTT
REM 2LTT
REM STRIDE: Knowledge-based secondary structure assignment 2LTT
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2LTT
REM 2LTT
REM Residue accessible surface area calculation 2LTT
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2LTT
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2LTT
REM 2LTT
REM ------------------------ General information ----------------------- 2LTT
REM 2LTT
HDR TRANSCRIPTION, DNA BINDING PROTEIN/DNA 31-MAY-12 2LTT 2LTT
CMP MOL_ID: 1; 2LTT
CMP MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN YDBC; 2LTT
CMP CHAIN: A, B; 2LTT
CMP ENGINEERED: YES; 2LTT
CMP MOL_ID: 2; 2LTT
CMP MOLECULE: DNA (5'- 2LTT
CMP D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'); 2LTT
CMP CHAIN: C; 2LTT
CMP ENGINEERED: YES 2LTT
SRC MOL_ID: 1; 2LTT
SRC ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS; 2LTT
SRC ORGANISM_TAXID: 272623; 2LTT
SRC STRAIN: IL1403; 2LTT
SRC GENE: YDBC, LL0313, L114363; 2LTT
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2LTT
SRC EXPRESSION_SYSTEM_TAXID: 562; 2LTT
SRC EXPRESSION_SYSTEM_VECTOR: PET21_NESG; 2LTT
SRC MOL_ID: 2; 2LTT
SRC SYNTHETIC: YES 2LTT
AUT P.ROSSI,C.M.BARBIERI,J.A.ARAMINI,E.BINI,H.LEE,H.JANJUA,C.CICC 2LTT
AUT H.WANG,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,NORTHEAST 2LTT
AUT STRUCTURAL GENOMICS CONSORTIUM (NESG) 2LTT
REM 2LTT
REM -------------------- Secondary structure summary ------------------- 2LTT
REM 2LTT
CHN /data/npidb/pdb/pdb_new/all/pdb2ltt.pdb A 2LTT
REM 2LTT
REM . . . . . 2LTT
SEQ 1 MADKLKFEIIEELIVLSENAKGWRKELNRVSWNDAEPKYDIRTWSPDHEK 50 2LTT
STR TTTT EEEEEEEEEEEETTTT EEEEEEEEEGG EEEEEEEEETTTT 2LTT
REM 2LTT
REM . . 2LTT
SEQ 51 MGKGITLSEEEFGVLLKELGNKLE 74 2LTT
STR B EEE HHHHHHHHHHHHHHH 2LTT
REM 2LTT
CHN /data/npidb/pdb/pdb_new/all/pdb2ltt.pdb B 2LTT
REM 2LTT
REM . . . . . 2LTT
SEQ 1 MADKLKFEIIEELIVLSENAKGWRKELNRVSWNDAEPKYDIRTWSPDHEK 50 2LTT
STR TTTT EEEEEEEEEEEETTTT EEEEEEEEEGG EEEEEEEEETTTT 2LTT
REM 2LTT
REM . . 2LTT
SEQ 51 MGKGITLSEEEFGVLLKELGNKLE 74 2LTT
STR EEE HHHHHHHHHHHHHHH 2LTT
REM 2LTT
REM 2LTT
REM 2LTT
LOC AlphaHelix GLU 59 A LEU 73 A 2LTT
LOC AlphaHelix GLU 59 B LEU 73 B 2LTT
LOC 310Helix ASN 33 A ASP 34 A 2LTT
LOC 310Helix ASN 33 B ASP 34 B 2LTT
LOC Strand PHE 7 A GLU 18 A 2LTT
LOC Strand ARG 24 A TRP 32 A 2LTT
LOC Strand GLU 36 A TRP 44 A 2LTT
LOC Strand ILE 55 A LEU 57 A 2LTT
LOC Strand PHE 7 B GLU 18 B 2LTT
LOC Strand ARG 24 B TRP 32 B 2LTT
LOC Strand GLU 36 B TRP 44 B 2LTT
LOC Strand ILE 55 B LEU 57 B 2LTT
LOC TurnVIII ALA 2 A LEU 5 A 2LTT
LOC TurnI ASN 19 A GLY 22 A 2LTT
LOC TurnI SER 45 A HIS 48 A 2LTT
LOC TurnVIII ALA 2 B LEU 5 B 2LTT
LOC TurnI ASN 19 B GLY 22 B 2LTT
LOC TurnI SER 45 B HIS 48 B 2LTT
REM 2LTT
REM --------------- Detailed secondary structure assignment------------- 2LTT
REM 2LTT
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2LTT
ASG MET A 1 1 C Coil 360.00 -66.74 219.6 2LTT
ASG ALA A 2 2 T Turn -80.06 160.16 69.2 2LTT
ASG ASP A 3 3 T Turn -64.16 -49.41 119.4 2LTT
ASG LYS A 4 4 T Turn -134.55 108.32 131.1 2LTT
ASG LEU A 5 5 T Turn -82.77 134.70 103.7 2LTT
ASG LYS A 6 6 C Coil -70.31 139.18 137.5 2LTT
ASG PHE A 7 7 E Strand -166.57 175.08 111.6 2LTT
ASG GLU A 8 8 E Strand -158.51 134.01 101.0 2LTT
ASG ILE A 9 9 E Strand -80.79 111.82 82.9 2LTT
ASG ILE A 10 10 E Strand -83.40 -45.96 78.3 2LTT
ASG GLU A 11 11 E Strand -159.31 132.43 79.0 2LTT
ASG GLU A 12 12 E Strand -84.00 127.44 139.2 2LTT
ASG LEU A 13 13 E Strand -99.99 -74.76 34.7 2LTT
ASG ILE A 14 14 E Strand -130.09 144.16 4.8 2LTT
ASG VAL A 15 15 E Strand -124.48 123.86 78.5 2LTT
ASG LEU A 16 16 E Strand -91.02 -80.36 17.4 2LTT
ASG SER A 17 17 E Strand 175.51 -177.42 70.8 2LTT
ASG GLU A 18 18 E Strand -97.26 164.08 87.4 2LTT
ASG ASN A 19 19 T Turn -113.38 -166.40 55.2 2LTT
ASG ALA A 20 20 T Turn -63.88 -29.23 111.4 2LTT
ASG LYS A 21 21 T Turn -87.91 -1.84 143.0 2LTT
ASG GLY A 22 22 T Turn 84.64 0.15 10.0 2LTT
ASG TRP A 23 23 C Coil -52.95 107.07 117.5 2LTT
ASG ARG A 24 24 E Strand -79.97 100.28 56.1 2LTT
ASG LYS A 25 25 E Strand -82.59 112.75 9.0 2LTT
ASG GLU A 26 26 E Strand -139.25 161.67 20.9 2LTT
ASG LEU A 27 27 E Strand -130.37 108.07 2.4 2LTT
ASG ASN A 28 28 E Strand -135.62 157.38 8.9 2LTT
ASG ARG A 29 29 E Strand -97.51 114.66 66.3 2LTT
ASG VAL A 30 30 E Strand -124.69 162.16 23.3 2LTT
ASG SER A 31 31 E Strand -95.31 122.23 2.8 2LTT
ASG TRP A 32 32 E Strand -63.86 109.46 115.4 2LTT
ASG ASN A 33 33 G 310Helix 60.11 29.55 92.5 2LTT
ASG ASP A 34 34 G 310Helix 61.63 35.11 99.8 2LTT
ASG ALA A 35 35 C Coil -121.64 -76.80 77.9 2LTT
ASG GLU A 36 36 E Strand -92.48 116.16 99.6 2LTT
ASG PRO A 37 37 E Strand -81.63 120.60 66.3 2LTT
ASG LYS A 38 38 E Strand -149.88 159.55 35.9 2LTT
ASG TYR A 39 39 E Strand -78.68 133.95 42.7 2LTT
ASG ASP A 40 40 E Strand -144.43 129.01 13.4 2LTT
ASG ILE A 41 41 E Strand -106.13 122.44 9.2 2LTT
ASG ARG A 42 42 E Strand -149.14 174.27 57.1 2LTT
ASG THR A 43 43 E Strand -124.19 138.44 20.5 2LTT
ASG TRP A 44 44 E Strand -117.89 176.92 57.1 2LTT
ASG SER A 45 45 T Turn -66.13 150.70 27.3 2LTT
ASG PRO A 46 46 T Turn -57.04 -38.16 74.9 2LTT
ASG ASP A 47 47 T Turn -88.11 5.70 124.9 2LTT
ASG HIS A 48 48 T Turn 57.86 28.05 102.4 2LTT
ASG GLU A 49 49 C Coil -81.03 -31.91 124.0 2LTT
ASG LYS A 50 50 C Coil -140.71 174.79 89.5 2LTT
ASG MET A 51 51 B Bridge -127.79 172.59 94.5 2LTT
ASG GLY A 52 52 C Coil -138.35 -170.26 31.9 2LTT
ASG LYS A 53 53 C Coil -103.62 141.77 166.8 2LTT
ASG GLY A 54 54 C Coil -141.00 -117.46 18.2 2LTT
ASG ILE A 55 55 E Strand -152.78 142.12 22.2 2LTT
ASG THR A 56 56 E Strand -96.77 135.13 30.9 2LTT
ASG LEU A 57 57 E Strand -115.02 117.44 8.4 2LTT
ASG SER A 58 58 C Coil -78.58 169.96 24.3 2LTT
ASG GLU A 59 59 H AlphaHelix -57.38 -44.86 143.6 2LTT
ASG GLU A 60 60 H AlphaHelix -54.97 -45.04 102.8 2LTT
ASG GLU A 61 61 H AlphaHelix -69.26 -59.77 7.0 2LTT
ASG PHE A 62 62 H AlphaHelix -52.32 -42.15 18.4 2LTT
ASG GLY A 63 63 H AlphaHelix -58.68 -59.68 42.0 2LTT
ASG VAL A 64 64 H AlphaHelix -64.63 -41.28 59.3 2LTT
ASG LEU A 65 65 H AlphaHelix -57.67 -54.24 9.0 2LTT
ASG LEU A 66 66 H AlphaHelix -62.37 -43.24 9.5 2LTT
ASG LYS A 67 67 H AlphaHelix -53.43 -50.77 133.5 2LTT
ASG GLU A 68 68 H AlphaHelix -71.50 -48.82 50.9 2LTT
ASG LEU A 69 69 H AlphaHelix -57.37 -45.45 4.2 2LTT
ASG GLY A 70 70 H AlphaHelix -61.69 -38.06 15.2 2LTT
ASG ASN A 71 71 H AlphaHelix -73.51 -25.21 81.5 2LTT
ASG LYS A 72 72 H AlphaHelix -67.82 -29.02 123.5 2LTT
ASG LEU A 73 73 H AlphaHelix -87.72 3.14 93.9 2LTT
ASG GLU A 74 74 C Coil -81.06 360.00 183.3 2LTT
ASG MET B 1 1 C Coil 360.00 -59.64 218.4 2LTT
ASG ALA B 2 2 T Turn -89.44 161.22 68.8 2LTT
ASG ASP B 3 3 T Turn -64.13 -50.26 120.2 2LTT
ASG LYS B 4 4 T Turn -135.02 109.88 127.6 2LTT
ASG LEU B 5 5 T Turn -83.88 135.82 102.0 2LTT
ASG LYS B 6 6 C Coil -71.34 137.37 135.3 2LTT
ASG PHE B 7 7 E Strand -164.60 177.25 112.0 2LTT
ASG GLU B 8 8 E Strand -159.88 131.97 101.8 2LTT
ASG ILE B 9 9 E Strand -78.37 108.87 82.2 2LTT
ASG ILE B 10 10 E Strand -80.02 -50.23 80.2 2LTT
ASG GLU B 11 11 E Strand -156.51 130.75 82.8 2LTT
ASG GLU B 12 12 E Strand -82.08 132.14 135.0 2LTT
ASG LEU B 13 13 E Strand -103.87 -71.42 33.8 2LTT
ASG ILE B 14 14 E Strand -131.80 142.37 5.9 2LTT
ASG VAL B 15 15 E Strand -124.26 121.51 79.2 2LTT
ASG LEU B 16 16 E Strand -88.24 -80.54 17.5 2LTT
ASG SER B 17 17 E Strand 175.25 -178.01 72.6 2LTT
ASG GLU B 18 18 E Strand -97.15 163.76 87.3 2LTT
ASG ASN B 19 19 T Turn -112.77 -164.01 57.8 2LTT
ASG ALA B 20 20 T Turn -68.33 -23.57 110.8 2LTT
ASG LYS B 21 21 T Turn -93.80 -0.35 142.8 2LTT
ASG GLY B 22 22 T Turn 84.39 0.09 10.4 2LTT
ASG TRP B 23 23 C Coil -53.59 107.62 117.3 2LTT
ASG ARG B 24 24 E Strand -80.46 100.20 55.3 2LTT
ASG LYS B 25 25 E Strand -81.50 113.19 10.0 2LTT
ASG GLU B 26 26 E Strand -139.74 162.03 19.7 2LTT
ASG LEU B 27 27 E Strand -131.76 107.14 2.4 2LTT
ASG ASN B 28 28 E Strand -135.50 155.95 7.0 2LTT
ASG ARG B 29 29 E Strand -96.18 114.53 63.9 2LTT
ASG VAL B 30 30 E Strand -122.91 162.19 23.1 2LTT
ASG SER B 31 31 E Strand -94.97 121.96 3.0 2LTT
ASG TRP B 32 32 E Strand -63.63 109.92 115.7 2LTT
ASG ASN B 33 33 G 310Helix 60.54 28.14 94.7 2LTT
ASG ASP B 34 34 G 310Helix 65.91 25.29 97.3 2LTT
ASG ALA B 35 35 C Coil -113.74 -78.41 77.7 2LTT
ASG GLU B 36 36 E Strand -87.48 117.17 95.8 2LTT
ASG PRO B 37 37 E Strand -82.82 119.45 64.9 2LTT
ASG LYS B 38 38 E Strand -148.51 158.38 33.1 2LTT
ASG TYR B 39 39 E Strand -78.60 133.08 45.5 2LTT
ASG ASP B 40 40 E Strand -143.72 129.25 12.9 2LTT
ASG ILE B 41 41 E Strand -106.67 122.50 9.8 2LTT
ASG ARG B 42 42 E Strand -149.23 175.07 57.7 2LTT
ASG THR B 43 43 E Strand -125.17 138.30 21.1 2LTT
ASG TRP B 44 44 E Strand -117.88 176.87 56.9 2LTT
ASG SER B 45 45 T Turn -64.99 150.79 25.1 2LTT
ASG PRO B 46 46 T Turn -55.39 -42.27 73.3 2LTT
ASG ASP B 47 47 T Turn -88.36 11.75 130.0 2LTT
ASG HIS B 48 48 T Turn 53.48 33.35 102.9 2LTT
ASG GLU B 49 49 C Coil -84.02 -32.79 125.3 2LTT
ASG LYS B 50 50 C Coil -141.32 174.31 86.6 2LTT
ASG MET B 51 51 C Coil -126.27 173.05 94.4 2LTT
ASG GLY B 52 52 C Coil -139.72 -169.21 31.9 2LTT
ASG LYS B 53 53 C Coil -102.26 144.59 164.1 2LTT
ASG GLY B 54 54 C Coil -144.18 -120.25 19.6 2LTT
ASG ILE B 55 55 E Strand -151.65 142.38 21.6 2LTT
ASG THR B 56 56 E Strand -96.55 136.09 30.3 2LTT
ASG LEU B 57 57 E Strand -114.83 117.53 8.8 2LTT
ASG SER B 58 58 C Coil -78.65 171.18 28.1 2LTT
ASG GLU B 59 59 H AlphaHelix -58.39 -44.83 143.7 2LTT
ASG GLU B 60 60 H AlphaHelix -55.13 -45.03 101.7 2LTT
ASG GLU B 61 61 H AlphaHelix -70.25 -60.52 8.4 2LTT
ASG PHE B 62 62 H AlphaHelix -52.83 -38.27 16.4 2LTT
ASG GLY B 63 63 H AlphaHelix -60.96 -57.90 42.2 2LTT
ASG VAL B 64 64 H AlphaHelix -66.76 -40.07 56.8 2LTT
ASG LEU B 65 65 H AlphaHelix -58.21 -53.18 9.4 2LTT
ASG LEU B 66 66 H AlphaHelix -60.30 -49.89 18.0 2LTT
ASG LYS B 67 67 H AlphaHelix -50.78 -51.58 128.9 2LTT
ASG GLU B 68 68 H AlphaHelix -70.41 -49.20 54.7 2LTT
ASG LEU B 69 69 H AlphaHelix -59.81 -42.74 4.5 2LTT
ASG GLY B 70 70 H AlphaHelix -62.49 -39.40 13.8 2LTT
ASG ASN B 71 71 H AlphaHelix -72.88 -25.44 79.2 2LTT
ASG LYS B 72 72 H AlphaHelix -66.44 -29.67 122.4 2LTT
ASG LEU B 73 73 H AlphaHelix -90.97 5.15 98.3 2LTT
ASG GLU B 74 74 C Coil -77.87 360.00 183.1 2LTT