Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2kae.std.txt Дата изменения: Tue Jan 18 09:07:00 2011 Дата индексирования: Fri Feb 11 17:56:38 2011 Кодировка:

REM -------------------------------------------------------------------- 2KAE
REM 2KAE
REM STRIDE: Knowledge-based secondary structure assignment 2KAE
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2KAE
REM 2KAE
REM Residue accessible surface area calculation 2KAE
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2KAE
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2KAE
REM 2KAE
REM ------------------------ General information ----------------------- 2KAE
REM 2KAE
HDR TRANSCRIPTION/DNA 04-NOV-08 2KAE 2KAE
CMP MOL_ID: 1; 2KAE
CMP MOLECULE: GATA-TYPE TRANSCRIPTION FACTOR; 2KAE
CMP CHAIN: A; 2KAE
CMP FRAGMENT: UNP RESIDUES 111-166; 2KAE
CMP ENGINEERED: YES; 2KAE
CMP MOL_ID: 2; 2KAE
CMP MOLECULE: 5'- 2KAE
CMP D(*DCP*DGP*DGP*DAP*DAP*DAP*DAP*DGP*DTP*DAP*DTP*DAP*DCP*DTP* 2KAE
CMP DTP*DTP*DTP*DCP*DCP*DG)-3'; 2KAE
CMP CHAIN: C, B; 2KAE
CMP ENGINEERED: YES 2KAE
SRC MOL_ID: 1; 2KAE
SRC ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; 2KAE
SRC ORGANISM_COMMON: NEMATODE; 2KAE
SRC ORGANISM_TAXID: 6239; 2KAE
SRC GENE: MED-1, T24D3.1; 2KAE
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2KAE
SRC EXPRESSION_SYSTEM_TAXID: 562; 2KAE
SRC EXPRESSION_SYSTEM_STRAIN: ROSETTA2; 2KAE
SRC EXPRESSION_SYSTEM_VECTOR: PET15B; 2KAE
SRC MOL_ID: 2; 2KAE
SRC SYNTHETIC: YES 2KAE
AUT J.A.LOWRY,R.GAMSJAEGER,S.THONG,W.HUNG,A.H.KWAN,G.BROITMAN- 2KAE
AUT MADURO,J.M.MATTHEWS,M.MADURO,J.P.MACKAY 2KAE
REM 2KAE
REM -------------------- Secondary structure summary ------------------- 2KAE
REM 2KAE
CHN /data/npidb/pdb/pdb_new/all/pdb2kae.pdb A 2KAE
REM 2KAE
REM . . . . . 2KAE
SEQ 1 SFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQK 50 2KAE
STR TTTTTTTTTTTT TTT HHHHHHHHTTTT HHHHHHHHT 2KAE
REM 2KAE
REM 2KAE
SEQ 51 RKLKVQ 56 2KAE
STR TTTTT 2KAE
REM 2KAE
REM 2KAE
REM 2KAE
LOC AlphaHelix ASN 137 A ARG 144 A 2KAE
LOC AlphaHelix VAL 152 A GLN 159 A 2KAE
LOC TurnIV CYS 114 A CYS 117 A 2KAE
LOC TurnIV SER 115 A SER 118 A 2KAE
LOC TurnIV VAL 119 A THR 122 A 2KAE
LOC TurnVIII THR 122 A TRP 125 A 2KAE
LOC TurnI ARG 144 A ASN 147 A 2KAE
LOC TurnIV LYS 145 A LYS 148 A 2KAE
LOC TurnIV GLN 159 A LYS 162 A 2KAE
LOC TurnI LYS 160 A LEU 163 A 2KAE
LOC TurnI ARG 161 A LYS 164 A 2KAE
LOC TurnIV LYS 162 A VAL 165 A 2KAE
LOC GammaInv GLY 133 A GLN 135 A 2KAE
REM 2KAE
REM --------------- Detailed secondary structure assignment------------- 2KAE
REM 2KAE
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2KAE
ASG SER A 111 1 C Coil 360.00 146.23 124.6 2KAE
ASG PHE A 112 2 C Coil -127.43 -106.30 144.9 2KAE
ASG GLN A 113 3 C Coil 174.29 157.70 78.9 2KAE
ASG CYS A 114 4 T Turn -84.50 171.61 8.7 2KAE
ASG SER A 115 5 T Turn -106.30 22.50 65.9 2KAE
ASG ASN A 116 6 T Turn -159.86 -41.39 112.7 2KAE
ASG CYS A 117 7 T Turn -90.59 -73.40 54.4 2KAE
ASG SER A 118 8 T Turn 82.65 82.61 65.2 2KAE
ASG VAL A 119 9 T Turn -149.26 100.48 76.3 2KAE
ASG THR A 120 10 T Turn -50.17 -34.74 70.3 2KAE
ASG GLU A 121 11 T Turn -88.26 79.15 168.3 2KAE
ASG THR A 122 12 T Turn -98.30 109.53 16.1 2KAE
ASG ILE A 123 13 T Turn -44.07 -33.70 143.3 2KAE
ASG ARG A 124 14 T Turn -160.34 121.04 193.2 2KAE
ASG TRP A 125 15 T Turn -75.91 -176.94 76.3 2KAE
ASG ARG A 126 16 C Coil -165.71 17.37 97.3 2KAE
ASG ASN A 127 17 C Coil -44.77 -39.77 31.2 2KAE
ASG ILE A 128 18 C Coil 45.98 83.80 99.4 2KAE
ASG ARG A 129 19 C Coil -34.72 96.09 250.1 2KAE
ASG SER A 130 20 C Coil -153.33 -78.53 86.3 2KAE
ASG LYS A 131 21 C Coil -144.54 -66.63 165.3 2KAE
ASG GLU A 132 22 C Coil -77.54 172.82 103.8 2KAE
ASG GLY A 133 23 T Turn -135.87 90.87 17.5 2KAE
ASG ILE A 134 24 T Turn -84.72 73.60 31.5 2KAE
ASG GLN A 135 25 T Turn -50.55 -45.30 0.0 2KAE
ASG CYS A 136 26 C Coil -68.15 174.25 2.8 2KAE
ASG ASN A 137 27 H AlphaHelix -112.73 -8.09 63.7 2KAE
ASG ALA A 138 28 H AlphaHelix -74.57 -50.25 47.8 2KAE
ASG CYS A 139 29 H AlphaHelix -58.18 -45.53 15.0 2KAE
ASG PHE A 140 30 H AlphaHelix -73.40 -54.37 82.5 2KAE
ASG ILE A 141 31 H AlphaHelix -70.27 -38.73 75.1 2KAE
ASG TYR A 142 32 H AlphaHelix -68.72 -31.34 128.6 2KAE
ASG GLN A 143 33 H AlphaHelix -63.90 -13.46 77.3 2KAE
ASG ARG A 144 34 H AlphaHelix -44.38 -50.01 113.2 2KAE
ASG LYS A 145 35 T Turn -86.96 -30.62 130.8 2KAE
ASG TYR A 146 36 T Turn -79.50 0.51 167.1 2KAE
ASG ASN A 147 37 T Turn -120.93 -38.66 118.2 2KAE
ASG LYS A 148 38 T Turn -162.67 -163.90 133.2 2KAE
ASG THR A 149 39 C Coil -73.12 101.17 116.8 2KAE
ASG ARG A 150 40 C Coil -45.39 137.60 121.3 2KAE
ASG PRO A 151 41 C Coil -56.92 128.73 53.9 2KAE
ASG VAL A 152 42 H AlphaHelix -67.17 -9.95 104.6 2KAE
ASG THR A 153 43 H AlphaHelix -55.36 -52.47 101.2 2KAE
ASG ALA A 154 44 H AlphaHelix -60.92 -28.25 51.2 2KAE
ASG VAL A 155 45 H AlphaHelix -71.61 -43.17 40.1 2KAE
ASG ASN A 156 46 H AlphaHelix -49.50 -44.40 98.8 2KAE
ASG LYS A 157 47 H AlphaHelix -82.23 -24.41 145.1 2KAE
ASG TYR A 158 48 H AlphaHelix -51.69 -40.20 116.4 2KAE
ASG GLN A 159 49 H AlphaHelix -46.70 -26.41 60.3 2KAE
ASG LYS A 160 50 T Turn -49.12 -31.78 160.3 2KAE
ASG ARG A 161 51 T Turn -86.51 -47.66 157.5 2KAE
ASG LYS A 162 52 T Turn -66.20 -11.54 88.0 2KAE
ASG LEU A 163 53 T Turn -93.82 -13.21 124.0 2KAE
ASG LYS A 164 54 T Turn -84.73 -52.62 158.2 2KAE
ASG VAL A 165 55 T Turn -134.99 144.34 107.2 2KAE
ASG GLN A 166 56 C Coil -163.52 360.00 204.3 2KAE