Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2f8k.std.txt Дата изменения: Thu Oct 4 22:03:58 2012 Дата индексирования: Sun Feb 3 21:30:39 2013 Кодировка:

REM -------------------------------------------------------------------- 2F8K
REM 2F8K
REM STRIDE: Knowledge-based secondary structure assignment 2F8K
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2F8K
REM 2F8K
REM Residue accessible surface area calculation 2F8K
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2F8K
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2F8K
REM 2F8K
REM ------------------------ General information ----------------------- 2F8K
REM 2F8K
HDR RNA BINDING PROTEIN/ RNA 02-DEC-05 2F8K 2F8K
CMP MOL_ID: 1; 2F8K
CMP MOLECULE: 5'-R(*UP*AP*AP*UP*CP*UP*UP*UP*GP*AP*CP*AP*GP*AP*UP 2F8K
CMP CHAIN: B; 2F8K
CMP ENGINEERED: YES; 2F8K
CMP OTHER_DETAILS: SRE23; 2F8K
CMP MOL_ID: 2; 2F8K
CMP MOLECULE: PROTEIN VTS1; 2F8K
CMP CHAIN: A; 2F8K
CMP SYNONYM: VTI1-2 SUPPRESSOR PROTEIN 1; 2F8K
CMP ENGINEERED: YES 2F8K
SRC MOL_ID: 1; 2F8K
SRC SYNTHETIC: YES; 2F8K
SRC MOL_ID: 2; 2F8K
SRC ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; 2F8K
SRC ORGANISM_COMMON: BAKER'S YEAST; 2F8K
SRC ORGANISM_TAXID: 4932; 2F8K
SRC GENE: VTS1; 2F8K
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; 2F8K
SRC EXPRESSION_SYSTEM_TAXID: 511693; 2F8K
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 2F8K
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2F8K
SRC EXPRESSION_SYSTEM_PLASMID: PGEX 2F8K
AUT T.AVIV,Z.LIN,G.BEN-ARI,C.A.SMIBERT,F.SICHERI 2F8K
REM 2F8K
REM -------------------- Secondary structure summary ------------------- 2F8K
REM 2F8K
CHN /data/npidb/pdb/pdb_new/all/pdb2f8k.pdb A 2F8K
REM 2F8K
REM . . . . . 2F8K
SEQ 1 SSMNPKSLTDPKLLKNIPMWLKSLRLHKYSDALSGTPWIELIYLDDETLE 50 2F8K
STR TTTTHHHHH HHHHH HHHHHHHH GGGHHHHH HHHHH HHHHH 2F8K
REM 2F8K
REM . . . 2F8K
SEQ 51 KKGVLALGARRKLLKAFGIVIDYKERDLIDRSAY 84 2F8K
STR HH HHHHHHHHHHHHHHHHHHHH GGG 2F8K
REM 2F8K
REM 2F8K
REM 2F8K
LOC AlphaHelix PRO 444 A THR 448 A 2F8K
LOC AlphaHelix PRO 450 A LYS 454 A 2F8K
LOC AlphaHelix ILE 456 A LEU 463 A 2F8K
LOC AlphaHelix SER 469 A SER 473 A 2F8K
LOC AlphaHelix TRP 477 A ILE 481 A 2F8K
LOC AlphaHelix ASP 485 A LYS 491 A 2F8K
LOC AlphaHelix LEU 496 A ARG 515 A 2F8K
LOC 310Helix HIS 466 A TYR 468 A 2F8K
LOC 310Helix ARG 520 A ALA 522 A 2F8K
LOC TurnI SER 440 A ASN 443 A 2F8K
REM 2F8K
REM --------------- Detailed secondary structure assignment------------- 2F8K
REM 2F8K
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2F8K
ASG SER A 440 1 T Turn 360.00 -60.40 117.7 2F8K
ASG SER A 441 2 T Turn -80.84 -3.09 34.9 2F8K
ASG MET A 442 3 T Turn -95.14 32.90 44.1 2F8K
ASG ASN A 443 4 T Turn -113.82 144.63 56.0 2F8K
ASG PRO A 444 5 H AlphaHelix -47.16 -39.71 44.7 2F8K
ASG LYS A 445 6 H AlphaHelix -61.53 -43.48 74.4 2F8K
ASG SER A 446 7 H AlphaHelix -75.89 -42.49 31.3 2F8K
ASG LEU A 447 8 H AlphaHelix -69.19 -23.02 0.2 2F8K
ASG THR A 448 9 H AlphaHelix -109.00 17.66 11.7 2F8K
ASG ASP A 449 10 C Coil -63.56 125.86 58.6 2F8K
ASG PRO A 450 11 H AlphaHelix -60.33 -37.81 24.0 2F8K
ASG LYS A 451 12 H AlphaHelix -54.14 -42.72 171.3 2F8K
ASG LEU A 452 13 H AlphaHelix -79.67 -41.89 32.5 2F8K
ASG LEU A 453 14 H AlphaHelix -57.39 -33.47 2.6 2F8K
ASG LYS A 454 15 H AlphaHelix -86.44 4.24 126.9 2F8K
ASG ASN A 455 16 C Coil -146.87 81.71 73.1 2F8K
ASG ILE A 456 17 H AlphaHelix -57.56 -42.91 9.8 2F8K
ASG PRO A 457 18 H AlphaHelix -50.25 -40.68 40.2 2F8K
ASG MET A 458 19 H AlphaHelix -73.74 -35.20 92.5 2F8K
ASG TRP A 459 20 H AlphaHelix -61.61 -44.56 2.0 2F8K
ASG LEU A 460 21 H AlphaHelix -65.35 -42.38 0.0 2F8K
ASG LYS A 461 22 H AlphaHelix -55.23 -39.42 115.7 2F8K
ASG SER A 462 23 H AlphaHelix -67.61 -27.43 35.0 2F8K
ASG LEU A 463 24 H AlphaHelix -91.64 5.69 0.6 2F8K
ASG ARG A 464 25 C Coil 57.86 34.09 196.0 2F8K
ASG LEU A 465 26 C Coil -116.42 18.01 15.5 2F8K
ASG HIS A 466 27 G 310Helix -59.44 -20.12 85.9 2F8K
ASG LYS A 467 28 G 310Helix -61.49 -18.93 162.5 2F8K
ASG TYR A 468 29 G 310Helix -94.69 14.15 20.9 2F8K
ASG SER A 469 30 H AlphaHelix -65.05 -39.84 20.8 2F8K
ASG ASP A 470 31 H AlphaHelix -64.04 -38.37 158.8 2F8K
ASG ALA A 471 32 H AlphaHelix -72.54 -31.16 34.5 2F8K
ASG LEU A 472 33 H AlphaHelix -113.85 -19.03 0.0 2F8K
ASG SER A 473 34 H AlphaHelix -72.73 -12.95 53.2 2F8K
ASG GLY A 474 35 C Coil -78.43 -9.59 75.5 2F8K
ASG THR A 475 36 C Coil -100.22 125.90 14.5 2F8K
ASG PRO A 476 37 C Coil -69.40 153.17 62.3 2F8K
ASG TRP A 477 38 H AlphaHelix -53.67 -43.25 17.7 2F8K
ASG ILE A 478 39 H AlphaHelix -61.65 -23.58 67.9 2F8K
ASG GLU A 479 40 H AlphaHelix -94.64 -39.80 116.5 2F8K
ASG LEU A 480 41 H AlphaHelix -53.59 -41.66 1.2 2F8K
ASG ILE A 481 42 H AlphaHelix -73.57 -11.47 4.7 2F8K
ASG TYR A 482 43 C Coil -102.21 2.98 113.8 2F8K
ASG LEU A 483 44 C Coil -69.86 150.66 32.0 2F8K
ASG ASP A 484 45 C Coil -99.61 174.36 77.6 2F8K
ASG ASP A 485 46 H AlphaHelix -51.86 -47.70 63.9 2F8K
ASG GLU A 486 47 H AlphaHelix -60.13 -45.10 151.5 2F8K
ASG THR A 487 48 H AlphaHelix -67.83 -43.10 50.4 2F8K
ASG LEU A 488 49 H AlphaHelix -55.41 -40.83 0.0 2F8K
ASG GLU A 489 50 H AlphaHelix -70.19 -43.73 89.1 2F8K
ASG LYS A 490 51 H AlphaHelix -53.52 -42.54 89.2 2F8K
ASG LYS A 491 52 H AlphaHelix -68.06 -17.15 87.9 2F8K
ASG GLY A 492 53 C Coil 120.02 7.48 27.2 2F8K
ASG VAL A 493 54 C Coil -85.45 87.79 0.0 2F8K
ASG LEU A 494 55 C Coil -83.91 -22.58 129.0 2F8K
ASG ALA A 495 56 C Coil -89.34 123.23 46.0 2F8K
ASG LEU A 496 57 H AlphaHelix -56.50 -42.10 82.6 2F8K
ASG GLY A 497 58 H AlphaHelix -58.18 -34.17 46.5 2F8K
ASG ALA A 498 59 H AlphaHelix -73.03 -41.79 10.7 2F8K
ASG ARG A 499 60 H AlphaHelix -63.93 -37.47 17.4 2F8K
ASG ARG A 500 61 H AlphaHelix -64.92 -42.99 166.1 2F8K
ASG LYS A 501 62 H AlphaHelix -67.65 -44.29 47.3 2F8K
ASG LEU A 502 63 H AlphaHelix -54.09 -49.29 0.4 2F8K
ASG LEU A 503 64 H AlphaHelix -67.32 -28.81 56.1 2F8K
ASG LYS A 504 65 H AlphaHelix -72.26 -51.10 138.8 2F8K
ASG ALA A 505 66 H AlphaHelix -57.58 -42.58 0.0 2F8K
ASG PHE A 506 67 H AlphaHelix -56.67 -47.63 2.6 2F8K
ASG GLY A 507 68 H AlphaHelix -63.96 -28.20 37.0 2F8K
ASG ILE A 508 69 H AlphaHelix -68.45 -49.40 37.7 2F8K
ASG VAL A 509 70 H AlphaHelix -57.47 -47.64 0.0 2F8K
ASG ILE A 510 71 H AlphaHelix -52.22 -55.97 30.3 2F8K
ASG ASP A 511 72 H AlphaHelix -48.30 -49.75 64.3 2F8K
ASG TYR A 512 73 H AlphaHelix -65.12 -32.02 70.8 2F8K
ASG LYS A 513 74 H AlphaHelix -68.18 -47.13 52.1 2F8K
ASG GLU A 514 75 H AlphaHelix -58.28 -36.21 127.8 2F8K
ASG ARG A 515 76 H AlphaHelix -85.44 5.33 155.7 2F8K
ASG ASP A 516 77 C Coil 59.68 42.47 142.5 2F8K
ASG LEU A 517 78 C Coil -121.87 23.34 92.9 2F8K
ASG ILE A 518 79 C Coil -109.52 133.21 11.4 2F8K
ASG ASP A 519 80 C Coil -58.42 146.09 98.1 2F8K
ASG ARG A 520 81 G 310Helix -57.90 -29.65 219.1 2F8K
ASG SER A 521 82 G 310Helix -70.59 1.23 63.1 2F8K
ASG ALA A 522 83 G 310Helix -93.56 -15.18 1.8 2F8K
ASG TYR A 523 84 C Coil -94.75 360.00 140.4 2F8K