Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/2bzf.std.txt Дата изменения: Fri Jan 21 02:48:33 2011 Дата индексирования: Fri Feb 11 17:54:00 2011 Кодировка:

REM -------------------------------------------------------------------- 2BZF
REM 2BZF
REM STRIDE: Knowledge-based secondary structure assignment 2BZF
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 2BZF
REM 2BZF
REM Residue accessible surface area calculation 2BZF
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 2BZF
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 2BZF
REM 2BZF
REM ------------------------ General information ----------------------- 2BZF
REM 2BZF
HDR DNA-BINDING PROTEIN 16-AUG-05 2BZF 2BZF
CMP MOL_ID: 1; 2BZF
CMP MOLECULE: BARRIER-TO-AUTOINTEGRATION FACTOR; 2BZF
CMP CHAIN: A; 2BZF
CMP ENGINEERED: YES; 2BZF
CMP MOL_ID: 2; 2BZF
CMP MOLECULE: 5'-D(*GP*TP*GP*GP*AP*GP*GP)-3'; 2BZF
CMP CHAIN: B; 2BZF
CMP MOL_ID: 3; 2BZF
CMP MOLECULE: 5'-D(*CP*CP*TP*CP*CP*AP*CP)-3'; 2BZF
CMP CHAIN: C 2BZF
SRC MOL_ID: 1; 2BZF
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 2BZF
SRC ORGANISM_COMMON: HUMAN; 2BZF
SRC ORGANISM_TAXID: 9606; 2BZF
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 2BZF
SRC EXPRESSION_SYSTEM_TAXID: 469008; 2BZF
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3); 2BZF
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 2BZF
SRC EXPRESSION_SYSTEM_PLASMID: PET15B; 2BZF
SRC MOL_ID: 2; 2BZF
SRC SYNTHETIC: YES; 2BZF
SRC MOL_ID: 3; 2BZF
SRC SYNTHETIC: YES 2BZF
AUT C.M.BRADLEY,D.R.RONNING,R.GHIRLANDO,R.CRAIGIE,F.DYDA 2BZF
REM 2BZF
REM -------------------- Secondary structure summary ------------------- 2BZF
REM 2BZF
CHN /data/npidb/pdb/pdb_new/all/pdb2bzf.pdb A 2BZF
REM 2BZF
REM . . . . . 2BZF
SEQ 1 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLV 50 2BZF
STR TTTGGGTTTT TTTT GGGTTTTTTTTTTTTGGGTTT GGGGGGTTTT 2BZF
REM 2BZF
REM . . . 2BZF
SEQ 51 LKKDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL 88 2BZF
STR TTTTTTTGGG GGGTTT TTTTTTTTTTTGGG GGG 2BZF
REM 2BZF
REM 2BZF
REM 2BZF
LOC 310Helix HIS 7 A ASP 9 A 2BZF
LOC 310Helix VAL 20 A SER 22 A 2BZF
LOC 310Helix GLU 35 A ARG 37 A 2BZF
LOC 310Helix ALA 42 A GLY 47 A 2BZF
LOC 310Helix PHE 59 A GLU 61 A 2BZF
LOC 310Helix LEU 63 A ASP 65 A 2BZF
LOC 310Helix LEU 81 A GLU 83 A 2BZF
LOC 310Helix CYS 85 A ALA 87 A 2BZF
LOC TurnIV SER 4 A HIS 7 A 2BZF
LOC TurnI' ASP 9 A ALA 12 A 2BZF
LOC TurnI' PHE 10 A GLU 13 A 2BZF
LOC TurnII MET 15 A LYS 18 A 2BZF
LOC TurnII' LEU 23 A ILE 26 A 2BZF
LOC TurnIV GLY 27 A LEU 30 A 2BZF
LOC TurnIV GLU 28 A GLY 31 A 2BZF
LOC TurnIV VAL 29 A LYS 32 A 2BZF
LOC TurnIV LEU 30 A LYS 33 A 2BZF
LOC TurnIV GLY 31 A LEU 34 A 2BZF
LOC TurnIV LYS 32 A GLU 35 A 2BZF
LOC TurnIV GLY 47 A LEU 50 A 2BZF
LOC TurnIV GLN 48 A VAL 51 A 2BZF
LOC TurnIV PHE 49 A LEU 52 A 2BZF
LOC TurnI' LEU 50 A LYS 53 A 2BZF
LOC TurnI LEU 52 A ASP 55 A 2BZF
LOC TurnIV ASP 55 A LEU 58 A 2BZF
LOC TurnIV GLU 56 A PHE 59 A 2BZF
LOC TurnI' ASP 65 A GLY 68 A 2BZF
LOC TurnI' ASN 70 A GLN 73 A 2BZF
LOC TurnIV ALA 71 A SER 74 A 2BZF
LOC TurnI' LYS 72 A ARG 75 A 2BZF
LOC TurnIV GLN 73 A ASP 76 A 2BZF
LOC TurnI' SER 74 A CYS 77 A 2BZF
LOC TurnIV ARG 75 A PHE 78 A 2BZF
LOC TurnIV ASP 76 A GLY 79 A 2BZF
LOC TurnIV CYS 77 A CYS 80 A 2BZF
LOC TurnIV PHE 78 A LEU 81 A 2BZF
LOC GammaClassic GLY 38 A ASP 40 A 2BZF
REM 2BZF
REM --------------- Detailed secondary structure assignment------------- 2BZF
REM 2BZF
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 2BZF
ASG THR A 2 1 C Coil 360.00 43.84 188.5 2BZF
ASG THR A 3 2 C Coil 132.73 -139.20 45.6 2BZF
ASG SER A 4 3 T Turn 70.19 -162.20 54.7 2BZF
ASG GLN A 5 4 T Turn 66.17 40.64 108.3 2BZF
ASG LYS A 6 5 T Turn 50.58 46.79 79.7 2BZF
ASG HIS A 7 6 G 310Helix 50.68 66.93 12.4 2BZF
ASG ARG A 8 7 G 310Helix 45.67 43.06 106.5 2BZF
ASG ASP A 9 8 G 310Helix 57.56 39.81 86.3 2BZF
ASG PHE A 10 9 T Turn 76.66 37.59 2.0 2BZF
ASG VAL A 11 10 T Turn 78.58 10.79 24.1 2BZF
ASG ALA A 12 11 T Turn 74.35 36.80 70.1 2BZF
ASG GLU A 13 12 T Turn 143.74 -162.03 104.9 2BZF
ASG PRO A 14 13 C Coil 53.25 -127.40 77.7 2BZF
ASG MET A 15 14 T Turn 56.33 34.61 7.4 2BZF
ASG GLY A 16 15 T Turn -52.40 105.11 48.2 2BZF
ASG GLU A 17 16 T Turn 112.54 -10.61 122.7 2BZF
ASG LYS A 18 17 T Turn 50.66 -143.96 40.3 2BZF
ASG PRO A 19 18 C Coil 76.18 -162.01 63.7 2BZF
ASG VAL A 20 19 G 310Helix 57.40 32.32 0.0 2BZF
ASG GLY A 21 20 G 310Helix 62.46 11.62 28.1 2BZF
ASG SER A 22 21 G 310Helix 80.55 13.67 33.1 2BZF
ASG LEU A 23 22 T Turn 69.96 -134.16 0.0 2BZF
ASG ALA A 24 23 T Turn 60.16 -133.37 0.2 2BZF
ASG GLY A 25 24 T Turn -93.37 17.74 21.7 2BZF
ASG ILE A 26 25 T Turn 103.24 -114.90 1.3 2BZF
ASG GLY A 27 26 T Turn 106.93 160.19 39.9 2BZF
ASG GLU A 28 27 T Turn 64.51 37.80 182.5 2BZF
ASG VAL A 29 28 T Turn 70.37 55.44 104.7 2BZF
ASG LEU A 30 29 T Turn 63.21 54.87 16.2 2BZF
ASG GLY A 31 30 T Turn 44.87 51.56 2.9 2BZF
ASG LYS A 32 31 T Turn 49.02 58.78 117.7 2BZF
ASG LYS A 33 32 T Turn 54.73 42.42 93.2 2BZF
ASG LEU A 34 33 T Turn 54.94 49.28 0.4 2BZF
ASG GLU A 35 34 G 310Helix 55.70 47.86 69.3 2BZF
ASG GLU A 36 35 G 310Helix 59.94 38.30 131.6 2BZF
ASG ARG A 37 36 G 310Helix 70.89 7.06 162.2 2BZF
ASG GLY A 38 37 T Turn -119.36 40.91 42.3 2BZF
ASG PHE A 39 38 T Turn 70.60 -88.20 37.3 2BZF
ASG ASP A 40 39 T Turn 106.59 -24.59 86.2 2BZF
ASG LYS A 41 40 C Coil 161.66 -133.69 48.9 2BZF
ASG ALA A 42 41 G 310Helix 43.49 48.03 0.2 2BZF
ASG TYR A 43 42 G 310Helix 57.97 28.21 109.9 2BZF
ASG VAL A 44 43 G 310Helix 67.32 39.49 38.1 2BZF
ASG VAL A 45 44 G 310Helix 66.17 37.75 0.2 2BZF
ASG LEU A 46 45 G 310Helix 62.13 34.31 17.8 2BZF
ASG GLY A 47 46 G 310Helix 63.97 41.67 30.8 2BZF
ASG GLN A 48 47 T Turn 67.99 36.97 40.6 2BZF
ASG PHE A 49 48 T Turn 62.05 51.85 1.2 2BZF
ASG LEU A 50 49 T Turn 59.73 42.74 62.6 2BZF
ASG VAL A 51 50 T Turn 58.39 44.95 103.3 2BZF
ASG LEU A 52 51 T Turn 78.87 -27.26 35.0 2BZF
ASG LYS A 53 52 T Turn -42.93 -33.78 181.7 2BZF
ASG LYS A 54 53 T Turn -70.44 -8.55 99.9 2BZF
ASG ASP A 55 54 T Turn 65.72 -123.50 67.6 2BZF
ASG GLU A 56 55 T Turn 57.64 60.86 68.3 2BZF
ASG ASP A 57 56 T Turn 55.42 52.46 116.8 2BZF
ASG LEU A 58 57 T Turn 52.74 50.08 89.7 2BZF
ASG PHE A 59 58 G 310Helix 62.38 54.13 0.0 2BZF
ASG ARG A 60 59 G 310Helix 58.60 34.18 44.7 2BZF
ASG GLU A 61 60 G 310Helix 74.35 31.60 102.0 2BZF
ASG TRP A 62 61 C Coil 68.88 44.34 37.9 2BZF
ASG LEU A 63 62 G 310Helix 56.77 59.90 0.0 2BZF
ASG LYS A 64 63 G 310Helix 48.76 35.80 133.5 2BZF
ASG ASP A 65 64 G 310Helix 81.82 21.89 95.7 2BZF
ASG THR A 66 65 T Turn 92.86 47.82 14.4 2BZF
ASG CYS A 67 66 T Turn 117.14 12.24 2.8 2BZF
ASG GLY A 68 67 T Turn -90.30 -24.45 43.4 2BZF
ASG ALA A 69 68 C Coil 59.50 -163.88 4.0 2BZF
ASG ASN A 70 69 T Turn 112.34 172.89 78.0 2BZF
ASG ALA A 71 70 T Turn 48.35 52.30 61.9 2BZF
ASG LYS A 72 71 T Turn 70.51 40.57 124.2 2BZF
ASG GLN A 73 72 T Turn 59.58 54.88 59.5 2BZF
ASG SER A 74 73 T Turn 65.45 39.14 6.8 2BZF
ASG ARG A 75 74 T Turn 57.16 49.18 110.6 2BZF
ASG ASP A 76 75 T Turn 67.04 42.77 40.3 2BZF
ASG CYS A 77 76 T Turn 60.45 45.60 0.2 2BZF
ASG PHE A 78 77 T Turn 59.84 62.32 9.4 2BZF
ASG GLY A 79 78 T Turn 52.54 31.21 9.0 2BZF
ASG CYS A 80 79 T Turn 62.40 58.55 0.0 2BZF
ASG LEU A 81 80 G 310Helix 62.37 45.52 0.0 2BZF
ASG ARG A 82 81 G 310Helix 49.70 43.34 112.9 2BZF
ASG GLU A 83 82 G 310Helix 73.48 37.31 73.5 2BZF
ASG TRP A 84 83 C Coil 59.68 42.81 25.3 2BZF
ASG CYS A 85 84 G 310Helix 63.94 44.06 3.0 2BZF
ASG ASP A 86 85 G 310Helix 64.99 17.88 125.0 2BZF
ASG ALA A 87 86 G 310Helix 96.16 26.91 54.7 2BZF
ASG PHE A 88 87 C Coil 133.62 26.62 82.6 2BZF
ASG LEU A 89 88 C Coil 70.83 360.00 136.2 2BZF