Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/1t38.std.txt Дата изменения: Thu Jan 20 17:25:52 2011 Дата индексирования: Fri Feb 11 17:51:11 2011 Кодировка:

REM -------------------------------------------------------------------- 1T38
REM 1T38
REM STRIDE: Knowledge-based secondary structure assignment 1T38
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1T38
REM 1T38
REM Residue accessible surface area calculation 1T38
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1T38
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1T38
REM 1T38
REM ------------------------ General information ----------------------- 1T38
REM 1T38
HDR TRANSFERASE/DNA 25-APR-04 1T38 1T38
CMP MOL_ID: 1; 1T38
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)- 1T38
CMP 3'; 1T38
CMP CHAIN: B; 1T38
CMP ENGINEERED: YES; 1T38
CMP MOL_ID: 2; 1T38
CMP MOLECULE: 5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3'; 1T38
CMP CHAIN: C; 1T38
CMP ENGINEERED: YES; 1T38
CMP MOL_ID: 3; 1T38
CMP MOLECULE: METHYLATED-DNA--PROTEIN-CYSTEINE 1T38
CMP METHYLTRANSFERASE; 1T38
CMP CHAIN: A; 1T38
CMP SYNONYM: 6-O-METHYLGUANINE-DNA METHYLTRANSFERASE; 1T38
CMP EC: 2.1.1.63; 1T38
CMP ENGINEERED: YES; 1T38
CMP MUTATION: YES 1T38
SRC MOL_ID: 1; 1T38
SRC SYNTHETIC: YES; 1T38
SRC MOL_ID: 2; 1T38
SRC SYNTHETIC: YES; 1T38
SRC MOL_ID: 3; 1T38
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 1T38
SRC ORGANISM_COMMON: HUMAN; 1T38
SRC ORGANISM_TAXID: 9606; 1T38
SRC GENE: MGMT; 1T38
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1T38
SRC EXPRESSION_SYSTEM_TAXID: 562; 1T38
SRC EXPRESSION_SYSTEM_STRAIN: JM109; 1T38
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1T38
SRC EXPRESSION_SYSTEM_PLASMID: PQE30 1T38
AUT D.S.DANIELS,T.T.WOO,K.X.LUU,D.M.NOLL,N.D.CLARKE,A.E.PEGG, 1T38
AUT J.A.TAINER 1T38
REM 1T38
REM -------------------- Secondary structure summary ------------------- 1T38
REM 1T38
CHN /data/npidb/pdb/pdb_new/all/pdb1t38.pdb A 1T38
REM 1T38
REM . . . . . 1T38
SEQ 1 EMKRTTLDSPLGKLELSGCEQGLHEIKLLGPEPLMQCTAWLNAYFHQPEA 50 1T38
STR EEEEE TTTTEEEEEEETTEEEEEEEEE HHHHHHHHHHHHHHH GGG 1T38
REM 1T38
REM . . . . . 1T38
SEQ 51 IEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPK 100 1T38
STR TTTT B TTTTTT HHHHHHHHHHHH TTTT EEHHHHHHHH TTT 1T38
REM 1T38
REM . . . . . 1T38
SEQ 101 AARAVGGAMRGNPVPILIPSHRVVCSSGAVGNYSGGLAVKEWLLAHEGHR 150 1T38
STR THHHHHHHHHHTTTTTTTTTTTEETTTTT TTTTHHHHHHHHHHH 1T38
REM 1T38
REM 1T38
SEQ 151 L 151 1T38
STR 1T38
REM 1T38
REM 1T38
REM 1T38
LOC AlphaHelix GLU 57 A HIS 71 A 1T38
LOC AlphaHelix PHE 94 A VAL 105 A 1T38
LOC AlphaHelix TYR 114 A ALA 121 A 1T38
LOC AlphaHelix ALA 127 A GLY 136 A 1T38
LOC AlphaHelix LEU 162 A GLU 172 A 1T38
LOC 310Helix PRO 73 A ALA 75 A 1T38
LOC Strand LYS 8 A LEU 12 A 1T38
LOC Strand LYS 18 A CYS 24 A 1T38
LOC Strand GLY 27 A GLY 35 A 1T38
LOC Strand ILE 112 A SER 113 A 1T38
LOC Strand VAL 148 A VAL 149 A 1T38
LOC TurnI SER 14 A GLY 17 A 1T38
LOC TurnI CYS 24 A GLY 27 A 1T38
LOC TurnI ALA 75 A GLU 78 A 1T38
LOC TurnI ILE 76 A PHE 79 A 1T38
LOC TurnIV HIS 86 A PHE 89 A 1T38
LOC TurnI PRO 87 A GLN 90 A 1T38
LOC TurnIV VAL 88 A GLN 91 A 1T38
LOC TurnII LYS 107 A GLU 110 A 1T38
LOC TurnI ASN 123 A ALA 126 A 1T38
LOC TurnIV PRO 124 A ALA 127 A 1T38
LOC TurnIV ASN 137 A PRO 140 A 1T38
LOC TurnIV VAL 139 A LEU 142 A 1T38
LOC TurnIV PRO 140 A ILE 143 A 1T38
LOC TurnIV ILE 141 A PRO 144 A 1T38
LOC TurnI PRO 144 A ARG 147 A 1T38
LOC TurnI SER 145 A VAL 148 A 1T38
LOC TurnI CYS 150 A GLY 153 A 1T38
LOC TurnIV SER 151 A ALA 154 A 1T38
LOC TurnI TYR 158 A GLY 161 A 1T38
REM 1T38
REM --------------- Detailed secondary structure assignment------------- 1T38
REM 1T38
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1T38
ASG GLU A 6 1 C Coil 360.00 109.39 176.7 1T38
ASG MET A 7 2 C Coil -57.88 128.09 113.2 1T38
ASG LYS A 8 3 E Strand -128.96 144.67 109.0 1T38
ASG ARG A 9 4 E Strand -124.03 150.63 105.5 1T38
ASG THR A 10 5 E Strand -152.24 140.93 54.2 1T38
ASG THR A 11 6 E Strand -100.28 164.41 73.7 1T38
ASG LEU A 12 7 E Strand -163.40 127.68 16.8 1T38
ASG ASP A 13 8 C Coil -66.52 149.83 110.4 1T38
ASG SER A 14 9 T Turn -162.43 167.76 19.6 1T38
ASG PRO A 15 10 T Turn -58.99 -23.82 66.2 1T38
ASG LEU A 16 11 T Turn -89.01 -10.42 37.2 1T38
ASG GLY A 17 12 T Turn 110.64 173.49 20.6 1T38
ASG LYS A 18 13 E Strand -48.64 107.20 101.1 1T38
ASG LEU A 19 14 E Strand -91.13 122.37 0.2 1T38
ASG GLU A 20 15 E Strand -105.54 115.36 37.9 1T38
ASG LEU A 21 16 E Strand -101.59 109.98 0.0 1T38
ASG SER A 22 17 E Strand -94.82 142.98 0.0 1T38
ASG GLY A 23 18 E Strand 168.07 155.13 0.6 1T38
ASG CYS A 24 19 E Strand -114.04 179.26 11.2 1T38
ASG GLU A 25 20 T Turn -50.26 -20.58 176.0 1T38
ASG GLN A 26 21 T Turn -80.90 -26.49 137.2 1T38
ASG GLY A 27 22 E Strand 161.71 175.84 0.0 1T38
ASG LEU A 28 23 E Strand -75.03 126.93 0.0 1T38
ASG HIS A 29 24 E Strand -85.02 -53.92 43.1 1T38
ASG GLU A 30 25 E Strand -166.07 128.90 65.5 1T38
ASG ILE A 31 26 E Strand -91.78 113.48 4.0 1T38
ASG LYS A 32 27 E Strand -116.72 149.04 103.5 1T38
ASG LEU A 33 28 E Strand -105.76 123.59 55.0 1T38
ASG LEU A 34 29 E Strand -95.10 -47.47 88.0 1T38
ASG GLY A 35 30 E Strand 63.38 360.00 88.1 1T38
ASG PRO A 56 31 C Coil 360.00 -179.88 58.9 1T38
ASG GLU A 57 32 H AlphaHelix -65.08 -36.23 136.5 1T38
ASG PRO A 58 33 H AlphaHelix -66.63 -45.65 4.8 1T38
ASG LEU A 59 34 H AlphaHelix -61.63 -39.51 15.4 1T38
ASG MET A 60 35 H AlphaHelix -66.03 -28.83 142.0 1T38
ASG GLN A 61 36 H AlphaHelix -84.56 -40.84 46.6 1T38
ASG CYS A 62 37 H AlphaHelix -65.90 -53.05 0.0 1T38
ASG THR A 63 38 H AlphaHelix -60.38 -0.44 47.2 1T38
ASG ALA A 64 39 H AlphaHelix -114.23 -33.67 33.4 1T38
ASG TRP A 65 40 H AlphaHelix -64.39 -46.52 20.8 1T38
ASG LEU A 66 41 H AlphaHelix -68.02 -56.85 0.0 1T38
ASG ASN A 67 42 H AlphaHelix -49.78 -20.83 76.9 1T38
ASG ALA A 68 43 H AlphaHelix -86.70 -58.00 3.3 1T38
ASG TYR A 69 44 H AlphaHelix -45.47 -42.36 0.2 1T38
ASG PHE A 70 45 H AlphaHelix -80.15 -50.18 12.4 1T38
ASG HIS A 71 46 H AlphaHelix -99.00 3.86 114.8 1T38
ASG GLN A 72 47 C Coil -167.66 55.00 98.0 1T38
ASG PRO A 73 48 G 310Helix -61.53 -27.41 26.2 1T38
ASG GLU A 74 49 G 310Helix -46.70 -37.63 185.6 1T38
ASG ALA A 75 50 G 310Helix -129.00 76.78 32.7 1T38
ASG ILE A 76 51 T Turn -99.24 -10.40 12.7 1T38
ASG GLU A 77 52 T Turn -77.39 -26.19 124.7 1T38
ASG GLU A 78 53 T Turn -66.45 -21.12 156.7 1T38
ASG PHE A 79 54 T Turn -93.81 145.98 45.9 1T38
ASG PRO A 80 55 C Coil -77.97 125.23 61.4 1T38
ASG VAL A 81 56 C Coil -77.50 117.15 77.6 1T38
ASG PRO A 82 57 C Coil -57.11 161.47 6.4 1T38
ASG ALA A 83 58 C Coil -76.52 133.00 53.6 1T38
ASG LEU A 84 59 B Bridge -97.86 123.21 36.9 1T38
ASG HIS A 85 60 C Coil -97.17 -34.68 45.5 1T38
ASG HIS A 86 61 T Turn -32.01 138.96 31.3 1T38
ASG PRO A 87 62 T Turn -54.71 1.78 57.2 1T38
ASG VAL A 88 63 T Turn -87.93 -30.49 35.1 1T38
ASG PHE A 89 64 T Turn -86.47 -9.03 17.9 1T38
ASG GLN A 90 65 T Turn -86.71 -57.34 110.6 1T38
ASG GLN A 91 66 T Turn -76.75 128.80 144.3 1T38
ASG GLU A 92 67 C Coil -71.95 133.46 119.9 1T38
ASG SER A 93 68 C Coil -160.07 -170.11 53.8 1T38
ASG PHE A 94 69 H AlphaHelix -75.70 -51.70 57.1 1T38
ASG THR A 95 70 H AlphaHelix -43.97 -55.94 48.3 1T38
ASG ARG A 96 71 H AlphaHelix -57.56 -46.18 38.5 1T38
ASG GLN A 97 72 H AlphaHelix -59.14 -45.65 61.1 1T38
ASG VAL A 98 73 H AlphaHelix -56.82 -69.13 0.0 1T38
ASG LEU A 99 74 H AlphaHelix -43.99 -38.50 0.6 1T38
ASG TRP A 100 75 H AlphaHelix -73.42 -59.00 128.7 1T38
ASG LYS A 101 76 H AlphaHelix -55.92 -13.01 77.8 1T38
ASG LEU A 102 77 H AlphaHelix -94.38 -53.14 0.0 1T38
ASG LEU A 103 78 H AlphaHelix -53.79 -37.54 43.2 1T38
ASG LYS A 104 79 H AlphaHelix -71.13 -66.36 141.1 1T38
ASG VAL A 105 80 H AlphaHelix -52.81 -63.89 59.2 1T38
ASG VAL A 106 81 C Coil -80.26 120.66 4.6 1T38
ASG LYS A 107 82 T Turn -123.79 161.34 79.0 1T38
ASG PHE A 108 83 T Turn -22.61 114.72 61.3 1T38
ASG GLY A 109 84 T Turn 95.07 -18.89 29.2 1T38
ASG GLU A 110 85 T Turn -87.84 167.78 97.5 1T38
ASG VAL A 111 86 C Coil -155.39 143.69 60.9 1T38
ASG ILE A 112 87 E Strand -136.98 131.43 10.8 1T38
ASG SER A 113 88 E Strand -68.99 151.75 12.6 1T38
ASG TYR A 114 89 H AlphaHelix -49.08 -43.41 48.7 1T38
ASG GLN A 115 90 H AlphaHelix -69.40 -41.59 115.2 1T38
ASG GLN A 116 91 H AlphaHelix -60.90 -24.41 109.7 1T38
ASG LEU A 117 92 H AlphaHelix -93.89 -20.18 0.0 1T38
ASG ALA A 118 93 H AlphaHelix -71.08 -49.11 0.0 1T38
ASG ALA A 119 94 H AlphaHelix -52.84 -37.95 53.4 1T38
ASG LEU A 120 95 H AlphaHelix -68.63 -52.09 62.7 1T38
ASG ALA A 121 96 H AlphaHelix -68.43 -26.23 16.4 1T38
ASG GLY A 122 97 C Coil 157.06 -91.04 41.5 1T38
ASG ASN A 123 98 T Turn -69.15 103.87 86.0 1T38
ASG PRO A 124 99 T Turn -65.00 -7.86 68.8 1T38
ASG LYS A 125 100 T Turn -92.74 -30.03 186.6 1T38
ASG ALA A 126 101 T Turn -72.15 37.41 23.0 1T38
ASG ALA A 127 102 H AlphaHelix -64.43 -43.12 19.1 1T38
ASG ARG A 128 103 H AlphaHelix -54.05 -47.07 236.2 1T38
ASG ALA A 129 104 H AlphaHelix -64.22 -16.18 58.8 1T38
ASG VAL A 130 105 H AlphaHelix -70.59 -30.11 0.0 1T38
ASG GLY A 131 106 H AlphaHelix -51.65 -60.33 27.0 1T38
ASG GLY A 132 107 H AlphaHelix -64.33 -26.53 45.8 1T38
ASG ALA A 133 108 H AlphaHelix -61.33 -47.74 3.3 1T38
ASG MET A 134 109 H AlphaHelix -70.28 -39.67 18.0 1T38
ASG ARG A 135 110 H AlphaHelix -57.65 -47.07 173.9 1T38
ASG GLY A 136 111 H AlphaHelix -76.67 -16.17 50.4 1T38
ASG ASN A 137 112 T Turn -46.06 116.73 13.8 1T38
ASG PRO A 138 113 T Turn -87.68 6.19 3.3 1T38
ASG VAL A 139 114 T Turn -141.02 64.76 0.0 1T38
ASG PRO A 140 115 T Turn -65.54 151.71 14.4 1T38
ASG ILE A 141 116 T Turn 85.45 -67.12 0.2 1T38
ASG LEU A 142 117 T Turn -50.38 -66.35 1.8 1T38
ASG ILE A 143 118 T Turn -88.71 99.58 0.0 1T38
ASG PRO A 144 119 T Turn -55.02 97.20 0.8 1T38
ASG SER A 145 120 T Turn -93.70 -23.82 9.1 1T38
ASG HIS A 146 121 T Turn -70.74 -16.59 0.0 1T38
ASG ARG A 147 122 T Turn -85.26 -4.41 10.2 1T38
ASG VAL A 148 123 E Strand -91.65 120.52 0.4 1T38
ASG VAL A 149 124 E Strand -132.14 169.80 16.8 1T38
ASG CYS A 150 125 T Turn -62.33 147.74 46.8 1T38
ASG SER A 151 126 T Turn -61.44 -32.08 76.6 1T38
ASG SER A 152 127 T Turn -67.53 4.08 107.1 1T38
ASG GLY A 153 128 T Turn 91.86 -22.00 59.0 1T38
ASG ALA A 154 129 T Turn -55.92 136.77 46.5 1T38
ASG VAL A 155 130 C Coil -53.67 -35.26 29.6 1T38
ASG GLY A 156 131 C Coil 84.65 169.35 19.2 1T38
ASG ASN A 157 132 C Coil -82.51 -179.67 121.8 1T38
ASG TYR A 158 133 T Turn -160.38 126.41 21.5 1T38
ASG SER A 159 134 T Turn -36.18 -73.26 70.8 1T38
ASG GLY A 160 135 T Turn -66.11 25.70 41.3 1T38
ASG GLY A 161 136 T Turn 89.22 112.49 36.4 1T38
ASG LEU A 162 137 H AlphaHelix -32.15 -31.15 71.5 1T38
ASG ALA A 163 138 H AlphaHelix -55.30 -46.76 75.6 1T38
ASG VAL A 164 139 H AlphaHelix -53.10 -62.52 22.7 1T38
ASG LYS A 165 140 H AlphaHelix -44.12 -38.09 1.4 1T38
ASG GLU A 166 141 H AlphaHelix -73.34 -52.35 81.8 1T38
ASG TRP A 167 142 H AlphaHelix -54.88 -37.11 103.4 1T38
ASG LEU A 168 143 H AlphaHelix -63.84 -59.42 0.0 1T38
ASG LEU A 169 144 H AlphaHelix -52.93 -40.84 7.4 1T38
ASG ALA A 170 145 H AlphaHelix -61.18 -40.99 48.3 1T38
ASG HIS A 171 146 H AlphaHelix -58.30 -42.42 50.6 1T38
ASG GLU A 172 147 H AlphaHelix -81.43 37.69 6.9 1T38
ASG GLY A 173 148 C Coil 65.46 14.10 71.3 1T38
ASG HIS A 174 149 C Coil -82.69 141.12 59.8 1T38
ASG ARG A 175 150 C Coil -82.49 131.11 229.0 1T38
ASG LEU A 176 151 C Coil -146.77 360.00 156.1 1T38