Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/1t4l.std.txt Дата изменения: Mon Jan 17 19:57:02 2011 Дата индексирования: Fri Feb 11 17:51:12 2011 Кодировка:

REM -------------------------------------------------------------------- 1T4L
REM 1T4L
REM STRIDE: Knowledge-based secondary structure assignment 1T4L
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1T4L
REM 1T4L
REM Residue accessible surface area calculation 1T4L
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1T4L
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1T4L
REM 1T4L
REM ------------------------ General information ----------------------- 1T4L
REM 1T4L
HDR RNA BINDING PROTEIN/RNA 29-APR-04 1T4L 1T4L
CMP MOL_ID: 1; 1T4L
CMP MOLECULE: 5' TERMINAL HAIRPIN OF SNR47 PRECURSOR; 1T4L
CMP CHAIN: A; 1T4L
CMP FRAGMENT: AGAA TETRALOOP RNA HAIRPIN; 1T4L
CMP ENGINEERED: YES; 1T4L
CMP MOL_ID: 2; 1T4L
CMP MOLECULE: RIBONUCLEASE III; 1T4L
CMP CHAIN: B; 1T4L
CMP FRAGMENT: DOUBLE-STRANDED RNA BINDING DOMAIN; 1T4L
CMP SYNONYM: RNASE III; 1T4L
CMP ENGINEERED: YES 1T4L
SRC MOL_ID: 1; 1T4L
SRC SYNTHETIC: YES; 1T4L
SRC MOL_ID: 2; 1T4L
SRC ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; 1T4L
SRC ORGANISM_COMMON: BAKER'S YEAST; 1T4L
SRC ORGANISM_TAXID: 4932; 1T4L
SRC GENE: RNT1, YMR239C, YM9408.01C, YM9959.21; 1T4L
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; 1T4L
SRC EXPRESSION_SYSTEM_TAXID: 511693; 1T4L
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 1T4L
SRC EXPRESSION_SYSTEM_PLASMID: PGEX-2T 1T4L
AUT H.WU,A.HENRAS,G.CHANFREAU,J.FEIGON 1T4L
REM 1T4L
REM -------------------- Secondary structure summary ------------------- 1T4L
REM 1T4L
CHN /data/npidb/pdb/pdb_new/all/pdb1t4l.pdb B 1T4L
REM 1T4L
REM . . . . . 1T4L
SEQ 1 GSLDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLG 50 1T4L
STR HHHHHHHHHHHH TTTT EEEEEE BTTBT EEEEEEETTTEEEE 1T4L
REM 1T4L
REM . . . . 1T4L
SEQ 51 TGVGRNIKIAGIRAAENALRDKKMLDFYAKQRAAIPRSES 90 1T4L
STR EEEETTTHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTT 1T4L
REM 1T4L
REM 1T4L
REM 1T4L
LOC AlphaHelix ASP 367 B ILE 378 B 1T4L
LOC AlphaHelix LYS 421 B LEU 432 B 1T4L
LOC AlphaHelix LYS 435 B ALA 447 B 1T4L
LOC Strand LEU 385 B VAL 390 B 1T4L
LOC Strand SER 400 B VAL 406 B 1T4L
LOC Strand THR 410 B GLY 417 B 1T4L
LOC TurnIV TYR 380 B LEU 383 B 1T4L
LOC TurnIV THR 394 B ASP 397 B 1T4L
LOC TurnIV ALA 395 B PRO 398 B 1T4L
LOC TurnI VAL 406 B GLY 409 B 1T4L
LOC TurnI GLY 417 B ILE 420 B 1T4L
LOC TurnIV LEU 432 B LYS 435 B 1T4L
LOC TurnIV ILE 448 B SER 451 B 1T4L
REM 1T4L
REM --------------- Detailed secondary structure assignment------------- 1T4L
REM 1T4L
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1T4L
ASG GLY B 364 1 C Coil 360.00 -91.20 104.5 1T4L
ASG SER B 365 2 C Coil 42.54 47.55 111.7 1T4L
ASG LEU B 366 3 C Coil -128.37 116.36 69.3 1T4L
ASG ASP B 367 4 H AlphaHelix -55.74 -61.91 73.8 1T4L
ASG MET B 368 5 H AlphaHelix -32.49 -52.21 87.8 1T4L
ASG ASN B 369 6 H AlphaHelix -58.65 -49.79 82.3 1T4L
ASG ALA B 370 7 H AlphaHelix -54.86 -79.28 0.2 1T4L
ASG LYS B 371 8 H AlphaHelix -29.33 -45.15 102.8 1T4L
ASG ARG B 372 9 H AlphaHelix -61.64 -61.64 109.4 1T4L
ASG GLN B 373 10 H AlphaHelix -40.93 -34.55 32.8 1T4L
ASG LEU B 374 11 H AlphaHelix -68.29 -80.90 13.7 1T4L
ASG TYR B 375 12 H AlphaHelix -85.88 27.79 160.6 1T4L
ASG SER B 376 13 H AlphaHelix -135.92 -31.57 60.3 1T4L
ASG LEU B 377 14 H AlphaHelix -109.39 -27.85 107.1 1T4L
ASG ILE B 378 15 H AlphaHelix -129.50 -62.50 15.8 1T4L
ASG GLY B 379 16 C Coil -32.64 102.72 20.8 1T4L
ASG TYR B 380 17 T Turn -115.04 177.73 39.5 1T4L
ASG ALA B 381 18 T Turn -65.99 118.14 94.0 1T4L
ASG SER B 382 19 T Turn 79.13 45.26 100.1 1T4L
ASG LEU B 383 20 T Turn -95.39 -42.16 9.4 1T4L
ASG ARG B 384 21 C Coil 84.56 -6.16 172.7 1T4L
ASG LEU B 385 22 E Strand -36.02 129.50 10.7 1T4L
ASG HIS B 386 23 E Strand -161.22 147.37 60.4 1T4L
ASG TYR B 387 24 E Strand -105.12 141.95 69.2 1T4L
ASG VAL B 388 25 E Strand -121.72 123.29 50.4 1T4L
ASG THR B 389 26 E Strand -76.15 130.41 93.8 1T4L
ASG VAL B 390 27 E Strand -141.36 144.90 51.7 1T4L
ASG LYS B 391 28 C Coil 95.68 56.23 146.7 1T4L
ASG LYS B 392 29 C Coil -31.21 107.41 172.9 1T4L
ASG PRO B 393 30 C Coil -44.98 159.53 71.6 1T4L
ASG THR B 394 31 B Bridge -128.12 158.27 63.2 1T4L
ASG ALA B 395 32 T Turn -86.28 13.83 106.6 1T4L
ASG VAL B 396 33 T Turn -136.96 14.05 125.5 1T4L
ASG ASP B 397 34 B Bridge 166.45 61.56 99.0 1T4L
ASG PRO B 398 35 T Turn -42.80 -32.18 64.9 1T4L
ASG ASN B 399 36 C Coil -30.67 127.21 50.1 1T4L
ASG SER B 400 37 E Strand -136.55 166.92 2.4 1T4L
ASG ILE B 401 38 E Strand -122.51 161.98 52.5 1T4L
ASG VAL B 402 39 E Strand -128.68 143.77 15.2 1T4L
ASG GLU B 403 40 E Strand -110.69 125.79 52.1 1T4L
ASG CYS B 404 41 E Strand -106.18 107.21 0.0 1T4L
ASG ARG B 405 42 E Strand -147.65 -171.31 69.2 1T4L
ASG VAL B 406 43 E Strand -135.85 147.50 0.6 1T4L
ASG GLY B 407 44 T Turn -35.34 -28.80 45.9 1T4L
ASG ASP B 408 45 T Turn -70.31 -3.17 94.6 1T4L
ASG GLY B 409 46 T Turn 82.26 33.06 54.6 1T4L
ASG THR B 410 47 E Strand -116.18 118.38 58.1 1T4L
ASG VAL B 411 48 E Strand -92.32 111.90 59.0 1T4L
ASG LEU B 412 49 E Strand -67.37 -36.21 11.1 1T4L
ASG GLY B 413 50 E Strand -175.29 -152.57 9.6 1T4L
ASG THR B 414 51 E Strand -159.92 174.17 55.5 1T4L
ASG GLY B 415 52 E Strand -169.03 128.51 3.9 1T4L
ASG VAL B 416 53 E Strand -123.49 155.59 67.9 1T4L
ASG GLY B 417 54 E Strand -164.43 169.22 12.6 1T4L
ASG ARG B 418 55 T Turn -79.98 -39.95 191.0 1T4L
ASG ASN B 419 56 T Turn -101.99 31.75 79.0 1T4L
ASG ILE B 420 57 T Turn 48.79 -46.09 56.7 1T4L
ASG LYS B 421 58 H AlphaHelix -44.42 -55.17 131.1 1T4L
ASG ILE B 422 59 H AlphaHelix -42.83 -34.26 55.8 1T4L
ASG ALA B 423 60 H AlphaHelix -68.61 -44.81 1.2 1T4L
ASG GLY B 424 61 H AlphaHelix -60.03 -62.98 30.8 1T4L
ASG ILE B 425 62 H AlphaHelix -56.73 -42.24 56.0 1T4L
ASG ARG B 426 63 H AlphaHelix -56.02 -43.57 115.9 1T4L
ASG ALA B 427 64 H AlphaHelix -56.41 -50.51 0.0 1T4L
ASG ALA B 428 65 H AlphaHelix -55.08 -59.65 8.4 1T4L
ASG GLU B 429 66 H AlphaHelix -50.07 -29.87 52.8 1T4L
ASG ASN B 430 67 H AlphaHelix -67.79 -38.12 33.1 1T4L
ASG ALA B 431 68 H AlphaHelix -62.69 -41.79 3.4 1T4L
ASG LEU B 432 69 H AlphaHelix -87.26 5.94 36.5 1T4L
ASG ARG B 433 70 T Turn -89.40 11.81 158.9 1T4L
ASG ASP B 434 71 T Turn -125.81 81.38 31.6 1T4L
ASG LYS B 435 72 H AlphaHelix -46.93 -49.35 162.4 1T4L
ASG LYS B 436 73 H AlphaHelix -61.22 -46.12 170.9 1T4L
ASG MET B 437 74 H AlphaHelix -63.24 -45.92 26.1 1T4L
ASG LEU B 438 75 H AlphaHelix -57.37 -62.42 21.4 1T4L
ASG ASP B 439 76 H AlphaHelix -54.03 -32.28 109.7 1T4L
ASG PHE B 440 77 H AlphaHelix -57.86 -43.30 71.8 1T4L
ASG TYR B 441 78 H AlphaHelix -73.81 -28.31 6.2 1T4L
ASG ALA B 442 79 H AlphaHelix -55.57 -51.37 49.9 1T4L
ASG LYS B 443 80 H AlphaHelix -63.31 -48.14 140.3 1T4L
ASG GLN B 444 81 H AlphaHelix -50.11 -44.93 62.5 1T4L
ASG ARG B 445 82 H AlphaHelix -55.84 -47.07 128.4 1T4L
ASG ALA B 446 83 H AlphaHelix -61.96 -42.01 88.7 1T4L
ASG ALA B 447 84 H AlphaHelix -72.58 -78.00 70.7 1T4L
ASG ILE B 448 85 T Turn -0.39 103.90 44.7 1T4L
ASG PRO B 449 86 T Turn -83.83 71.62 62.8 1T4L
ASG ARG B 450 87 T Turn 50.94 30.56 230.7 1T4L
ASG SER B 451 88 T Turn -176.57 -177.36 76.7 1T4L
ASG GLU B 452 89 C Coil -54.13 -66.28 158.8 1T4L
ASG SER B 453 90 C Coil -107.28 360.00 140.4 1T4L