Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/1j5n.std.txt Дата изменения: Thu Jan 20 17:40:34 2011 Дата индексирования: Fri Feb 11 17:47:32 2011 Кодировка:

REM -------------------------------------------------------------------- 1J5N
REM 1J5N
REM STRIDE: Knowledge-based secondary structure assignment 1J5N
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1J5N
REM 1J5N
REM Residue accessible surface area calculation 1J5N
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1J5N
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1J5N
REM 1J5N
REM ------------------------ General information ----------------------- 1J5N
REM 1J5N
HDR DNA BINDING PROTEIN/DNA 15-MAY-02 1J5N 1J5N
CMP MOL_ID: 1; 1J5N
CMP MOLECULE: NONHISTONE CHROMOSOMAL PROTEIN 6A; 1J5N
CMP CHAIN: A; 1J5N
CMP SYNONYM: NHP6A; 1J5N
CMP ENGINEERED: YES; 1J5N
CMP MOL_ID: 2; 1J5N
CMP MOLECULE: 5'- 1J5N
CMP D(*GP*GP*GP*GP*TP*GP*AP*TP*TP*GP*TP*TP*CP*AP*G)-3'; 1J5N
CMP CHAIN: B; 1J5N
CMP ENGINEERED: YES; 1J5N
CMP OTHER_DETAILS: SRY_DNA G-RICH STRAND; 1J5N
CMP MOL_ID: 3; 1J5N
CMP MOLECULE: 5'- 1J5N
CMP D(*CP*TP*GP*AP*AP*CP*AP*AP*TP*CP*AP*CP*CP*CP*C)-3'; 1J5N
CMP CHAIN: C; 1J5N
CMP ENGINEERED: YES; 1J5N
CMP OTHER_DETAILS: SRY_DNA C-RICH STRAND 1J5N
SRC MOL_ID: 1; 1J5N
SRC ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; 1J5N
SRC ORGANISM_COMMON: BAKER'S YEAST; 1J5N
SRC ORGANISM_TAXID: 4932; 1J5N
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1J5N
SRC EXPRESSION_SYSTEM_TAXID: 562; 1J5N
SRC MOL_ID: 2; 1J5N
SRC SYNTHETIC: YES; 1J5N
SRC OTHER_DETAILS: UNLABELED DNA MADE ON A COMMERCIAL 1J5N
SRC SYNTHESIZER, 15N,13C-LABELED DNA MADE ENZYMATICALLY IN 1J5N
SRC VITRO WITH TAQ POLYMERASE; 1J5N
SRC MOL_ID: 3; 1J5N
SRC SYNTHETIC: YES; 1J5N
SRC OTHER_DETAILS: UNLABELED DNA MADE ON A COMMERCIAL 1J5N
SRC SYNTHESIZER, 15N,13C-LABELED DNA MADE ENZYMATICALLY IN 1J5N
SRC VITRO WITH TAQ POLYMERASE 1J5N
AUT J.E.MASSE,B.WONG,Y.-M.YEN,F.H.-T.ALLAIN,R.C.JOHNSON,J.FEIGON 1J5N
REM 1J5N
REM -------------------- Secondary structure summary ------------------- 1J5N
REM 1J5N
CHN /data/npidb/pdb/pdb_new/all/pdb1j5n.pdb A 1J5N
REM 1J5N
REM . . . . . 1J5N
SEQ 1 MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQ 50 1J5N
STR TTTT TTTT TTTT HHHHHHHHHHHHHHHHHTTT HHH 1J5N
REM 1J5N
REM . . . . 1J5N
SEQ 51 VGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNATLA 93 1J5N
STR HHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHH 1J5N
REM 1J5N
REM 1J5N
REM 1J5N
LOC AlphaHelix ALA 27 A ASN 43 A 1J5N
LOC AlphaHelix PHE 48 A LEU 62 A 1J5N
LOC AlphaHelix PRO 64 A ALA 90 A 1J5N
LOC TurnVIII MET 1 A PRO 4 A 1J5N
LOC TurnIV ARG 10 A ARG 13 A 1J5N
LOC TurnI ASP 17 A ALA 20 A 1J5N
LOC TurnI ASN 43 A ILE 46 A 1J5N
REM 1J5N
REM --------------- Detailed secondary structure assignment------------- 1J5N
REM 1J5N
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1J5N
ASG MET A 1 1 T Turn 360.00 32.37 222.9 1J5N
ASG VAL A 2 2 T Turn -72.38 -18.78 139.5 1J5N
ASG THR A 3 3 T Turn -119.40 89.10 83.8 1J5N
ASG PRO A 4 4 T Turn -51.94 132.27 103.9 1J5N
ASG ARG A 5 5 C Coil -94.31 24.23 212.0 1J5N
ASG GLU A 6 6 C Coil -101.34 144.15 155.1 1J5N
ASG PRO A 7 7 C Coil -52.20 141.25 117.9 1J5N
ASG LYS A 8 8 C Coil -151.30 49.35 162.4 1J5N
ASG LYS A 9 9 C Coil 40.72 92.40 186.3 1J5N
ASG ARG A 10 10 T Turn -131.13 136.10 164.2 1J5N
ASG THR A 11 11 T Turn 161.12 120.11 89.5 1J5N
ASG THR A 12 12 T Turn 36.34 48.35 143.4 1J5N
ASG ARG A 13 13 T Turn -36.14 151.26 178.2 1J5N
ASG LYS A 14 14 C Coil -61.13 -166.16 193.1 1J5N
ASG LYS A 15 15 C Coil -94.01 174.47 117.0 1J5N
ASG LYS A 16 16 C Coil 168.12 82.56 168.5 1J5N
ASG ASP A 17 17 T Turn 157.35 150.28 64.9 1J5N
ASG PRO A 18 18 T Turn -57.82 -57.05 77.8 1J5N
ASG ASN A 19 19 T Turn -104.35 -28.88 55.7 1J5N
ASG ALA A 20 20 T Turn 50.52 78.99 10.9 1J5N
ASG PRO A 21 21 C Coil -55.62 -52.11 13.1 1J5N
ASG LYS A 22 22 C Coil 88.60 54.51 150.2 1J5N
ASG ARG A 23 23 C Coil 29.84 -151.79 171.9 1J5N
ASG ALA A 24 24 C Coil -128.52 169.65 12.5 1J5N
ASG LEU A 25 25 C Coil -58.13 -169.64 88.7 1J5N
ASG SER A 26 26 C Coil -131.83 161.74 68.2 1J5N
ASG ALA A 27 27 H AlphaHelix -59.21 -17.81 14.1 1J5N
ASG TYR A 28 28 H AlphaHelix -81.76 -26.61 82.8 1J5N
ASG MET A 29 29 H AlphaHelix -78.85 -45.22 75.8 1J5N
ASG PHE A 30 30 H AlphaHelix -67.11 -47.02 14.2 1J5N
ASG PHE A 31 31 H AlphaHelix -64.26 -51.24 7.4 1J5N
ASG ALA A 32 32 H AlphaHelix -56.15 -27.97 16.2 1J5N
ASG ASN A 33 33 H AlphaHelix -61.69 -48.73 81.3 1J5N
ASG GLU A 34 34 H AlphaHelix -66.63 -42.16 116.0 1J5N
ASG ASN A 35 35 H AlphaHelix -66.90 -73.66 11.4 1J5N
ASG ARG A 36 36 H AlphaHelix -10.07 -63.75 142.3 1J5N
ASG ASP A 37 37 H AlphaHelix -67.84 -51.24 59.1 1J5N
ASG ILE A 38 38 H AlphaHelix -57.78 -69.90 75.2 1J5N
ASG VAL A 39 39 H AlphaHelix -39.21 -64.09 15.7 1J5N
ASG ARG A 40 40 H AlphaHelix -63.30 -24.54 168.5 1J5N
ASG SER A 41 41 H AlphaHelix -70.58 -23.31 84.5 1J5N
ASG GLU A 42 42 H AlphaHelix -100.63 -17.09 148.1 1J5N
ASG ASN A 43 43 H AlphaHelix -135.19 56.66 60.7 1J5N
ASG PRO A 44 44 T Turn -59.09 -12.10 88.1 1J5N
ASG ASP A 45 45 T Turn -87.27 -34.75 160.8 1J5N
ASG ILE A 46 46 T Turn -76.03 139.64 46.4 1J5N
ASG THR A 47 47 C Coil -90.06 -167.52 102.6 1J5N
ASG PHE A 48 48 H AlphaHelix -56.52 -33.88 171.4 1J5N
ASG GLY A 49 49 H AlphaHelix -73.18 6.32 24.1 1J5N
ASG GLN A 50 50 H AlphaHelix -127.02 -53.37 76.6 1J5N
ASG VAL A 51 51 H AlphaHelix -61.89 -42.98 16.4 1J5N
ASG GLY A 52 52 H AlphaHelix -67.07 -67.94 9.8 1J5N
ASG LYS A 53 53 H AlphaHelix -52.81 -46.70 152.5 1J5N
ASG LYS A 54 54 H AlphaHelix -62.28 -28.34 104.4 1J5N
ASG LEU A 55 55 H AlphaHelix -62.78 -49.50 10.6 1J5N
ASG GLY A 56 56 H AlphaHelix -62.28 -51.02 17.2 1J5N
ASG GLU A 57 57 H AlphaHelix -55.49 -52.47 105.3 1J5N
ASG LYS A 58 58 H AlphaHelix -66.00 -25.76 106.5 1J5N
ASG TRP A 59 59 H AlphaHelix -57.42 -60.68 21.6 1J5N
ASG LYS A 60 60 H AlphaHelix -73.09 -17.95 165.0 1J5N
ASG ALA A 61 61 H AlphaHelix -65.08 -37.02 70.5 1J5N
ASG LEU A 62 62 H AlphaHelix -52.80 -71.47 62.3 1J5N
ASG THR A 63 63 C Coil 136.07 147.16 62.2 1J5N
ASG PRO A 64 64 H AlphaHelix -38.05 -48.20 83.2 1J5N
ASG GLU A 65 65 H AlphaHelix -56.19 -49.52 126.6 1J5N
ASG GLU A 66 66 H AlphaHelix -57.96 -26.18 87.5 1J5N
ASG LYS A 67 67 H AlphaHelix -79.73 -27.68 44.3 1J5N
ASG GLN A 68 68 H AlphaHelix -32.16 -50.80 124.0 1J5N
ASG PRO A 69 69 H AlphaHelix -53.17 -56.80 75.8 1J5N
ASG TYR A 70 70 H AlphaHelix -82.02 -61.96 32.5 1J5N
ASG GLU A 71 71 H AlphaHelix -39.58 -49.96 67.3 1J5N
ASG ALA A 72 72 H AlphaHelix -61.03 -43.10 45.9 1J5N
ASG LYS A 73 73 H AlphaHelix -59.74 -15.74 111.4 1J5N
ASG ALA A 74 74 H AlphaHelix -77.46 -46.92 16.7 1J5N
ASG GLN A 75 75 H AlphaHelix -62.24 -31.57 102.6 1J5N
ASG ALA A 76 76 H AlphaHelix -65.00 -48.00 46.2 1J5N
ASG ASP A 77 77 H AlphaHelix -71.37 -25.28 25.4 1J5N
ASG LYS A 78 78 H AlphaHelix -61.53 -45.97 83.2 1J5N
ASG LYS A 79 79 H AlphaHelix -68.62 -43.32 111.8 1J5N
ASG ARG A 80 80 H AlphaHelix -37.35 -59.05 130.6 1J5N
ASG TYR A 81 81 H AlphaHelix -71.28 -34.97 42.7 1J5N
ASG GLU A 82 82 H AlphaHelix -45.57 -24.98 72.2 1J5N
ASG SER A 83 83 H AlphaHelix -74.51 -47.70 41.1 1J5N
ASG GLU A 84 84 H AlphaHelix -68.17 -14.78 61.6 1J5N
ASG LYS A 85 85 H AlphaHelix -88.37 -47.00 74.8 1J5N
ASG GLU A 86 86 H AlphaHelix -54.68 -34.71 111.6 1J5N
ASG LEU A 87 87 H AlphaHelix -82.69 -40.81 82.0 1J5N
ASG TYR A 88 88 H AlphaHelix -36.39 -41.94 44.5 1J5N
ASG ASN A 89 89 H AlphaHelix -92.35 -31.03 79.4 1J5N
ASG ALA A 90 90 H AlphaHelix -78.21 11.45 69.1 1J5N
ASG THR A 91 91 C Coil -141.75 -41.63 82.5 1J5N
ASG LEU A 92 92 C Coil -74.81 -32.75 63.9 1J5N
ASG ALA A 93 93 C Coil -139.45 360.00 125.2 1J5N