Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/1dsz.std.txt Дата изменения: Fri Jan 21 14:46:30 2011 Дата индексирования: Fri Feb 11 17:46:08 2011 Кодировка:

REM -------------------------------------------------------------------- 1DSZ
REM 1DSZ
REM STRIDE: Knowledge-based secondary structure assignment 1DSZ
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1DSZ
REM 1DSZ
REM Residue accessible surface area calculation 1DSZ
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1DSZ
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1DSZ
REM 1DSZ
REM ------------------------ General information ----------------------- 1DSZ
REM 1DSZ
HDR TRANSCRIPTION/DNA 10-JAN-00 1DSZ 1DSZ
CMP MOL_ID: 1; 1DSZ
CMP MOLECULE: DNA (5'- 1DSZ
CMP D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3'); 1DSZ
CMP CHAIN: C; 1DSZ
CMP ENGINEERED: YES; 1DSZ
CMP MOL_ID: 2; 1DSZ
CMP MOLECULE: DNA (5'- 1DSZ
CMP D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*G)-3'); 1DSZ
CMP CHAIN: D; 1DSZ
CMP ENGINEERED: YES; 1DSZ
CMP MOL_ID: 3; 1DSZ
CMP MOLECULE: RETINOIC ACID RECEPTOR ALPHA; 1DSZ
CMP CHAIN: A; 1DSZ
CMP FRAGMENT: RESIDUES 82-167; 1DSZ
CMP SYNONYM: RAR-ALPHA; 1DSZ
CMP ENGINEERED: YES; 1DSZ
CMP MOL_ID: 4; 1DSZ
CMP MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA; 1DSZ
CMP CHAIN: B; 1DSZ
CMP FRAGMENT: RESIDUES 129-212; 1DSZ
CMP SYNONYM: RXR-ALPHA; 1DSZ
CMP ENGINEERED: YES 1DSZ
SRC MOL_ID: 1; 1DSZ
SRC SYNTHETIC: YES; 1DSZ
SRC MOL_ID: 2; 1DSZ
SRC SYNTHETIC: YES; 1DSZ
SRC MOL_ID: 3; 1DSZ
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 1DSZ
SRC ORGANISM_COMMON: HUMAN; 1DSZ
SRC ORGANISM_TAXID: 9606; 1DSZ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1DSZ
SRC EXPRESSION_SYSTEM_TAXID: 562; 1DSZ
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1DSZ
SRC EXPRESSION_SYSTEM_PLASMID: PGEX-2T; 1DSZ
SRC MOL_ID: 4; 1DSZ
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 1DSZ
SRC ORGANISM_COMMON: HUMAN; 1DSZ
SRC ORGANISM_TAXID: 9606; 1DSZ
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1DSZ
SRC EXPRESSION_SYSTEM_TAXID: 562; 1DSZ
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1DSZ
SRC EXPRESSION_SYSTEM_PLASMID: PGEX-2T 1DSZ
AUT F.RASTINEJAD,T.WAGNER,Q.ZHAO,S.KHORASANIZADEH 1DSZ
REM 1DSZ
REM -------------------- Secondary structure summary ------------------- 1DSZ
REM 1DSZ
CHN /data/npidb/pdb/pdb_new/all/pdb1dsz.pdb A 1DSZ
REM 1DSZ
REM . . . . . 1DSZ
SEQ 1 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVT 50 1DSZ
STR TTTTT EEETTEEE HHHHHHHHHHHHH TTTTTTT TTTT 1DSZ
REM 1DSZ
REM . . 1DSZ
SEQ 51 RNRCQYCRLQKCFEVGMSKESVRND 75 1DSZ
STR TTTTHHHHHHHHHHH GGG 1DSZ
REM 1DSZ
CHN /data/npidb/pdb/pdb_new/all/pdb1dsz.pdb B 1DSZ
REM 1DSZ
REM . . . . . 1DSZ
SEQ 1 GSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDC 50 1DSZ
STR TTTTEETTTTT EE EEETTEEE HHHHHHHHHHHHH TTTT 1DSZ
REM 1DSZ
REM . . . 1DSZ
SEQ 51 LIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 1DSZ
STR TTTTTTTTHHHHHHHHHHH GGG 1DSZ
REM 1DSZ
REM 1DSZ
REM 1DSZ
LOC AlphaHelix GLU 1153 A LYS 1165 A 1DSZ
LOC AlphaHelix GLN 1188 A VAL 1198 A 1DSZ
LOC AlphaHelix GLU 1253 B LYS 1265 B 1DSZ
LOC AlphaHelix GLN 1288 B MET 1298 B 1DSZ
LOC 310Helix LYS 1202 A SER 1204 A 1DSZ
LOC 310Helix ARG 1302 B ALA 1304 B 1DSZ
LOC Strand GLY 1144 A HIS 1146 A 1DSZ
LOC Strand VAL 1149 A ALA 1151 A 1DSZ
LOC Strand HIS 1233 B ILE 1234 B 1DSZ
LOC Strand ARG 1241 B SER 1242 B 1DSZ
LOC Strand GLY 1244 B HIS 1246 B 1DSZ
LOC Strand VAL 1249 B SER 1251 B 1DSZ
LOC TurnIV CYS 1135 A CYS 1138 A 1DSZ
LOC TurnI PHE 1136 A GLN 1139 A 1DSZ
LOC TurnIV TYR 1145 A GLY 1148 A 1DSZ
LOC TurnI' HIS 1146 A VAL 1149 A 1DSZ
LOC TurnIV CYS 1171 A ASP 1174 A 1DSZ
LOC TurnIV ASP 1174 A CYS 1177 A 1DSZ
LOC TurnI ASN 1180 A THR 1183 A 1DSZ
LOC TurnI LYS 1181 A ARG 1184 A 1DSZ
LOC TurnI THR 1183 A ARG 1186 A 1DSZ
LOC TurnI ARG 1184 A CYS 1187 A 1DSZ
LOC TurnVIII ASN 1185 A GLN 1188 A 1DSZ
LOC TurnVIII SER 1229 B LYS 1232 B 1DSZ
LOC TurnIV CYS 1235 B CYS 1238 B 1DSZ
LOC TurnI ALA 1236 B GLY 1239 B 1DSZ
LOC TurnIV LYS 1245 B GLY 1248 B 1DSZ
LOC TurnI' HIS 1246 B VAL 1249 B 1DSZ
LOC TurnIV CYS 1271 B ASN 1274 B 1DSZ
LOC TurnI ASP 1280 B GLN 1283 B 1DSZ
LOC TurnI LYS 1281 B ARG 1284 B 1DSZ
LOC TurnI GLN 1283 B ARG 1286 B 1DSZ
LOC TurnI ARG 1284 B CYS 1287 B 1DSZ
LOC TurnVIII ASN 1285 B GLN 1288 B 1DSZ
REM 1DSZ
REM --------------- Detailed secondary structure assignment------------- 1DSZ
REM 1DSZ
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1DSZ
ASG PRO A 1134 1 C Coil 360.00 160.38 105.5 1DSZ
ASG CYS A 1135 2 T Turn -58.05 126.65 0.0 1DSZ
ASG PHE A 1136 3 T Turn -64.02 -23.85 97.1 1DSZ
ASG VAL A 1137 4 T Turn -85.62 -45.79 0.0 1DSZ
ASG CYS A 1138 5 T Turn -128.38 -2.06 0.2 1DSZ
ASG GLN A 1139 6 T Turn 72.69 3.94 109.1 1DSZ
ASG ASP A 1140 7 C Coil -64.26 168.26 25.5 1DSZ
ASG LYS A 1141 8 C Coil -59.32 134.87 74.5 1DSZ
ASG SER A 1142 9 C Coil -86.17 155.15 40.0 1DSZ
ASG SER A 1143 10 C Coil -114.36 12.36 59.6 1DSZ
ASG GLY A 1144 11 E Strand 121.66 -171.81 31.3 1DSZ
ASG TYR A 1145 12 E Strand -77.23 136.15 160.6 1DSZ
ASG HIS A 1146 13 E Strand -142.95 119.70 31.1 1DSZ
ASG TYR A 1147 14 T Turn 56.99 30.94 43.7 1DSZ
ASG GLY A 1148 15 T Turn 104.64 -3.87 53.2 1DSZ
ASG VAL A 1149 16 E Strand -137.94 155.43 4.0 1DSZ
ASG SER A 1150 17 E Strand -60.63 124.98 20.0 1DSZ
ASG ALA A 1151 18 E Strand -149.11 151.02 0.0 1DSZ
ASG CYS A 1152 19 C Coil -79.26 165.28 1.8 1DSZ
ASG GLU A 1153 20 H AlphaHelix -59.32 -35.70 98.7 1DSZ
ASG GLY A 1154 21 H AlphaHelix -63.13 -45.97 28.5 1DSZ
ASG CYS A 1155 22 H AlphaHelix -71.86 -37.10 0.0 1DSZ
ASG LYS A 1156 23 H AlphaHelix -54.10 -55.06 57.1 1DSZ
ASG GLY A 1157 24 H AlphaHelix -64.35 -41.40 6.9 1DSZ
ASG PHE A 1158 25 H AlphaHelix -60.05 -48.27 6.8 1DSZ
ASG PHE A 1159 26 H AlphaHelix -57.96 -52.46 0.0 1DSZ
ASG ARG A 1160 27 H AlphaHelix -51.40 -51.35 87.2 1DSZ
ASG ARG A 1161 28 H AlphaHelix -61.31 -41.64 104.6 1DSZ
ASG SER A 1162 29 H AlphaHelix -59.85 -40.14 2.7 1DSZ
ASG ILE A 1163 30 H AlphaHelix -79.30 -50.11 30.1 1DSZ
ASG GLN A 1164 31 H AlphaHelix -52.56 -40.34 106.9 1DSZ
ASG LYS A 1165 32 H AlphaHelix -101.25 9.92 121.4 1DSZ
ASG ASN A 1166 33 C Coil 50.40 41.94 140.5 1DSZ
ASG MET A 1167 34 C Coil -59.85 142.64 74.9 1DSZ
ASG VAL A 1168 35 C Coil -122.06 121.88 90.5 1DSZ
ASG TYR A 1169 36 C Coil -112.68 164.19 36.5 1DSZ
ASG THR A 1170 37 C Coil -128.94 145.60 123.8 1DSZ
ASG CYS A 1171 38 T Turn -98.13 125.95 12.1 1DSZ
ASG HIS A 1172 39 T Turn -86.36 -4.09 107.3 1DSZ
ASG ARG A 1173 40 T Turn -120.04 -118.00 64.8 1DSZ
ASG ASP A 1174 41 T Turn -119.50 22.93 143.5 1DSZ
ASG LYS A 1175 42 T Turn 56.40 30.36 102.8 1DSZ
ASG ASN A 1176 43 T Turn -137.13 25.04 142.2 1DSZ
ASG CYS A 1177 44 T Turn -61.34 138.32 42.1 1DSZ
ASG ILE A 1178 45 C Coil -68.31 132.34 126.3 1DSZ
ASG ILE A 1179 46 C Coil -124.50 105.78 9.9 1DSZ
ASG ASN A 1180 47 T Turn -140.21 -172.13 52.9 1DSZ
ASG LYS A 1181 48 T Turn -60.16 -31.64 117.6 1DSZ
ASG VAL A 1182 49 T Turn -98.66 -7.30 107.2 1DSZ
ASG THR A 1183 50 T Turn -118.38 -3.74 35.8 1DSZ
ASG ARG A 1184 51 T Turn -57.31 -25.52 46.1 1DSZ
ASG ASN A 1185 52 T Turn -89.83 -2.08 55.8 1DSZ
ASG ARG A 1186 53 T Turn -72.18 -20.74 57.8 1DSZ
ASG CYS A 1187 54 T Turn -152.57 106.86 6.8 1DSZ
ASG GLN A 1188 55 H AlphaHelix -66.75 -38.16 70.8 1DSZ
ASG TYR A 1189 56 H AlphaHelix -55.12 -54.14 71.3 1DSZ
ASG CYS A 1190 57 H AlphaHelix -70.40 -30.81 2.7 1DSZ
ASG ARG A 1191 58 H AlphaHelix -63.46 -45.15 7.6 1DSZ
ASG LEU A 1192 59 H AlphaHelix -64.85 -48.48 22.6 1DSZ
ASG GLN A 1193 60 H AlphaHelix -51.97 -44.88 82.1 1DSZ
ASG LYS A 1194 61 H AlphaHelix -67.64 -32.84 64.7 1DSZ
ASG CYS A 1195 62 H AlphaHelix -57.47 -45.30 0.0 1DSZ
ASG PHE A 1196 63 H AlphaHelix -68.15 -47.25 84.2 1DSZ
ASG GLU A 1197 64 H AlphaHelix -51.92 -41.95 85.6 1DSZ
ASG VAL A 1198 65 H AlphaHelix -81.56 -8.09 44.7 1DSZ
ASG GLY A 1199 66 C Coil 110.80 19.16 40.6 1DSZ
ASG MET A 1200 67 C Coil -70.05 141.74 7.4 1DSZ
ASG SER A 1201 68 C Coil -109.80 114.48 34.3 1DSZ
ASG LYS A 1202 69 G 310Helix -67.42 -18.13 102.8 1DSZ
ASG GLU A 1203 70 G 310Helix -73.37 -6.84 140.0 1DSZ
ASG SER A 1204 71 G 310Helix -96.66 -0.09 63.9 1DSZ
ASG VAL A 1205 72 C Coil -85.59 111.53 17.4 1DSZ
ASG ARG A 1206 73 C Coil -75.11 144.29 226.6 1DSZ
ASG ASN A 1207 74 C Coil -56.71 155.73 160.5 1DSZ
ASG ASP A 1208 75 C Coil -53.87 360.00 156.1 1DSZ
ASG GLY B 1228 1 C Coil 360.00 -166.23 119.7 1DSZ
ASG SER B 1229 2 T Turn -61.11 147.62 81.9 1DSZ
ASG PHE B 1230 3 T Turn -72.19 -16.03 157.8 1DSZ
ASG THR B 1231 4 T Turn -91.05 115.92 106.4 1DSZ
ASG LYS B 1232 5 T Turn -115.07 -81.90 145.1 1DSZ
ASG HIS B 1233 6 E Strand -131.80 178.06 72.2 1DSZ
ASG ILE B 1234 7 E Strand -130.31 140.96 95.9 1DSZ
ASG CYS B 1235 8 T Turn -67.38 124.43 3.2 1DSZ
ASG ALA B 1236 9 T Turn -71.72 -18.66 37.5 1DSZ
ASG ILE B 1237 10 T Turn -85.57 -46.08 0.6 1DSZ
ASG CYS B 1238 11 T Turn -129.60 -6.39 7.2 1DSZ
ASG GLY B 1239 12 T Turn 92.16 -5.56 43.5 1DSZ
ASG ASP B 1240 13 C Coil -71.60 170.10 25.4 1DSZ
ASG ARG B 1241 14 E Strand -61.67 148.61 147.9 1DSZ
ASG SER B 1242 15 E Strand -142.44 141.72 8.8 1DSZ
ASG SER B 1243 16 C Coil -90.20 -15.96 88.3 1DSZ
ASG GLY B 1244 17 E Strand 163.58 -167.13 13.6 1DSZ
ASG LYS B 1245 18 E Strand -80.83 149.57 129.2 1DSZ
ASG HIS B 1246 19 E Strand -139.57 129.03 38.1 1DSZ
ASG TYR B 1247 20 T Turn 54.54 30.13 42.9 1DSZ
ASG GLY B 1248 21 T Turn 102.64 -5.18 34.0 1DSZ
ASG VAL B 1249 22 E Strand -142.02 138.99 10.4 1DSZ
ASG TYR B 1250 23 E Strand -53.87 120.65 89.4 1DSZ
ASG SER B 1251 24 E Strand -150.29 156.50 0.5 1DSZ
ASG CYS B 1252 25 C Coil -83.75 169.79 1.0 1DSZ
ASG GLU B 1253 26 H AlphaHelix -55.92 -42.54 139.8 1DSZ
ASG GLY B 1254 27 H AlphaHelix -60.71 -53.16 24.4 1DSZ
ASG CYS B 1255 28 H AlphaHelix -72.78 -37.48 0.0 1DSZ
ASG LYS B 1256 29 H AlphaHelix -54.12 -49.79 61.1 1DSZ
ASG GLY B 1257 30 H AlphaHelix -64.93 -45.10 10.5 1DSZ
ASG PHE B 1258 31 H AlphaHelix -61.95 -42.66 7.4 1DSZ
ASG PHE B 1259 32 H AlphaHelix -63.83 -48.63 0.0 1DSZ
ASG LYS B 1260 33 H AlphaHelix -54.63 -49.09 69.2 1DSZ
ASG ARG B 1261 34 H AlphaHelix -64.70 -41.23 120.1 1DSZ
ASG THR B 1262 35 H AlphaHelix -56.69 -48.61 2.2 1DSZ
ASG VAL B 1263 36 H AlphaHelix -67.80 -48.76 38.6 1DSZ
ASG ARG B 1264 37 H AlphaHelix -59.80 -39.82 108.9 1DSZ
ASG LYS B 1265 38 H AlphaHelix -99.00 2.70 125.4 1DSZ
ASG ASP B 1266 39 C Coil 43.48 52.67 131.7 1DSZ
ASG LEU B 1267 40 C Coil -73.91 144.50 62.1 1DSZ
ASG THR B 1268 41 C Coil -115.26 131.25 123.9 1DSZ
ASG TYR B 1269 42 C Coil -119.43 157.07 30.8 1DSZ
ASG THR B 1270 43 C Coil -128.91 139.30 125.4 1DSZ
ASG CYS B 1271 44 T Turn -85.75 128.28 18.2 1DSZ
ASG ARG B 1272 45 T Turn -83.46 3.67 113.1 1DSZ
ASG ASP B 1273 46 T Turn -123.67 -119.75 55.4 1DSZ
ASG ASN B 1274 47 T Turn -119.92 24.30 127.1 1DSZ
ASG LYS B 1275 48 C Coil 60.99 30.05 133.3 1DSZ
ASG ASP B 1276 49 C Coil -144.49 33.12 123.2 1DSZ
ASG CYS B 1277 50 C Coil -55.94 143.15 41.2 1DSZ
ASG LEU B 1278 51 C Coil -77.40 129.74 98.1 1DSZ
ASG ILE B 1279 52 C Coil -111.31 113.32 11.6 1DSZ
ASG ASP B 1280 53 T Turn -141.50 177.65 49.7 1DSZ
ASG LYS B 1281 54 T Turn -59.66 -42.05 115.7 1DSZ
ASG ARG B 1282 55 T Turn -78.49 -24.09 217.2 1DSZ
ASG GLN B 1283 56 T Turn -116.52 15.83 41.2 1DSZ
ASG ARG B 1284 57 T Turn -60.44 -24.11 43.0 1DSZ
ASG ASN B 1285 58 T Turn -89.11 -7.99 116.2 1DSZ
ASG ARG B 1286 59 T Turn -63.40 -40.20 202.7 1DSZ
ASG CYS B 1287 60 T Turn -132.57 103.49 16.1 1DSZ
ASG GLN B 1288 61 H AlphaHelix -65.82 -40.46 99.4 1DSZ
ASG TYR B 1289 62 H AlphaHelix -52.38 -54.49 55.3 1DSZ
ASG CYS B 1290 63 H AlphaHelix -73.80 -28.33 7.9 1DSZ
ASG ARG B 1291 64 H AlphaHelix -65.33 -47.56 5.8 1DSZ
ASG TYR B 1292 65 H AlphaHelix -64.47 -41.31 35.7 1DSZ
ASG GLN B 1293 66 H AlphaHelix -62.10 -34.32 78.9 1DSZ
ASG LYS B 1294 67 H AlphaHelix -75.49 -34.23 64.8 1DSZ
ASG CYS B 1295 68 H AlphaHelix -54.50 -47.39 0.0 1DSZ
ASG LEU B 1296 69 H AlphaHelix -66.58 -44.25 56.1 1DSZ
ASG ALA B 1297 70 H AlphaHelix -69.30 -24.54 82.4 1DSZ
ASG MET B 1298 71 H AlphaHelix -86.05 -8.04 90.9 1DSZ
ASG GLY B 1299 72 C Coil 122.91 3.50 34.0 1DSZ
ASG MET B 1300 73 C Coil -66.70 136.99 8.7 1DSZ
ASG LYS B 1301 74 C Coil -102.17 111.58 103.9 1DSZ
ASG ARG B 1302 75 G 310Helix -54.41 -37.88 157.1 1DSZ
ASG GLU B 1303 76 G 310Helix -73.67 -12.19 156.2 1DSZ
ASG ALA B 1304 77 G 310Helix -79.48 -13.78 40.3 1DSZ
ASG VAL B 1305 78 C Coil -75.60 127.94 18.3 1DSZ
ASG GLN B 1306 79 C Coil -96.85 177.33 114.0 1DSZ
ASG GLU B 1307 80 C Coil -76.63 160.94 146.1 1DSZ
ASG GLU B 1308 81 C Coil -57.74 147.96 157.5 1DSZ
ASG ARG B 1309 82 C Coil -119.38 -178.99 137.2 1DSZ
ASG GLN B 1310 83 C Coil -147.25 -38.81 91.3 1DSZ
ASG ARG B 1311 84 C Coil 60.14 360.00 26.7 1DSZ