Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/3sjm.std.txt Дата изменения: Fri Nov 23 12:57:05 2012 Дата индексирования: Mon Feb 4 00:33:26 2013 Кодировка:

REM -------------------------------------------------------------------- 3SJM
REM 3SJM
REM STRIDE: Knowledge-based secondary structure assignment 3SJM
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3SJM
REM 3SJM
REM Residue accessible surface area calculation 3SJM
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3SJM
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3SJM
REM 3SJM
REM ------------------------ General information ----------------------- 3SJM
REM 3SJM
HDR DNA/DNA BINDING PROTEIN 21-JUN-11 3SJM 3SJM
CMP MOL_ID: 1; 3SJM
CMP MOLECULE: DNA (5'- 3SJM
CMP D(*CP*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3') 3SJM
CMP CHAIN: C; 3SJM
CMP ENGINEERED: YES; 3SJM
CMP MOL_ID: 2; 3SJM
CMP MOLECULE: DNA (5'- 3SJM
CMP D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*GP*A)-3') 3SJM
CMP CHAIN: D; 3SJM
CMP ENGINEERED: YES; 3SJM
CMP MOL_ID: 3; 3SJM
CMP MOLECULE: TELOMERIC REPEAT-BINDING FACTOR 2; 3SJM
CMP CHAIN: A, B; 3SJM
CMP SYNONYM: TTAGGG REPEAT-BINDING FACTOR 2, TELOMERIC DNA-BINDI 3SJM
CMP PROTEIN; 3SJM
CMP ENGINEERED: YES 3SJM
SRC MOL_ID: 1; 3SJM
SRC SYNTHETIC: YES; 3SJM
SRC MOL_ID: 2; 3SJM
SRC SYNTHETIC: YES; 3SJM
SRC MOL_ID: 3; 3SJM
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3SJM
SRC ORGANISM_COMMON: HUMAN; 3SJM
SRC ORGANISM_TAXID: 9606; 3SJM
SRC GENE: TELOMERIC REPEAT BINDING FACTOR 2, TERF2, TRBF2, TRF2; 3SJM
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3SJM
SRC EXPRESSION_SYSTEM_TAXID: 562; 3SJM
SRC EXPRESSION_SYSTEM_STRAIN: ROSETTA; 3SJM
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3SJM
SRC EXPRESSION_SYSTEM_PLASMID: PET28B/THROMBIN 3SJM
AUT S.K.NAIR,S.K.SLIVERMAN,J.H.CHEN,Y.XIAO 3SJM
REM 3SJM
REM -------------------- Secondary structure summary ------------------- 3SJM
REM 3SJM
CHN /data/npidb/pdb/pdb_new/all/pdb3sjm.pdb A 3SJM
REM 3SJM
REM . . . . . 3SJM
SEQ 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50 3SJM
STR HHHHHHHHHHHHHHTTTTHHHHHHHTTTTTT HHHHHHHHHHHH 3SJM
REM 3SJM
REM 3SJM
SEQ 51 RLGMN 55 3SJM
STR HH 3SJM
REM 3SJM
CHN /data/npidb/pdb/pdb_new/all/pdb3sjm.pdb B 3SJM
REM 3SJM
REM . . . . . 3SJM
SEQ 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50 3SJM
STR HHHHHHHHHHHHHHTTTTHHHHHH TTTTTT HHHHHHHHHHHH 3SJM
REM 3SJM
REM 3SJM
SEQ 51 RLGMN 55 3SJM
STR HH 3SJM
REM 3SJM
REM 3SJM
REM 3SJM
LOC AlphaHelix VAL 452 A TYR 465 A 3SJM
LOC AlphaHelix TRP 470 A ASN 476 A 3SJM
LOC AlphaHelix ALA 484 A LEU 497 A 3SJM
LOC AlphaHelix VAL 452 B TYR 465 B 3SJM
LOC AlphaHelix TRP 470 B LYS 475 B 3SJM
LOC AlphaHelix ALA 484 B LEU 497 B 3SJM
LOC TurnII GLY 466 A ASN 469 A 3SJM
LOC TurnIV PHE 479 A ARG 482 A 3SJM
LOC GammaInv TYR 477 A PHE 479 A 3SJM
LOC TurnII GLY 466 B ASN 469 B 3SJM
LOC TurnIV PHE 479 B ARG 482 B 3SJM
LOC GammaInv TYR 477 B PHE 479 B 3SJM
REM 3SJM
REM --------------- Detailed secondary structure assignment------------- 3SJM
REM 3SJM
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3SJM
ASG LYS A 446 1 C Coil 360.00 -167.89 224.9 3SJM
ASG LYS A 447 2 C Coil -128.09 125.15 193.8 3SJM
ASG GLN A 448 3 C Coil -100.76 109.02 131.3 3SJM
ASG LYS A 449 4 C Coil -59.81 136.51 166.1 3SJM
ASG TRP A 450 5 C Coil -75.98 136.76 39.8 3SJM
ASG THR A 451 6 C Coil -85.91 164.35 65.6 3SJM
ASG VAL A 452 7 H AlphaHelix -61.49 -40.26 125.4 3SJM
ASG GLU A 453 8 H AlphaHelix -63.10 -46.79 117.0 3SJM
ASG GLU A 454 9 H AlphaHelix -60.52 -43.15 18.4 3SJM
ASG SER A 455 10 H AlphaHelix -64.29 -36.95 7.8 3SJM
ASG GLU A 456 11 H AlphaHelix -61.72 -40.54 102.1 3SJM
ASG TRP A 457 12 H AlphaHelix -60.33 -45.18 53.1 3SJM
ASG VAL A 458 13 H AlphaHelix -58.48 -47.81 0.0 3SJM
ASG LYS A 459 14 H AlphaHelix -64.41 -45.10 68.1 3SJM
ASG ALA A 460 15 H AlphaHelix -66.41 -34.32 43.5 3SJM
ASG GLY A 461 16 H AlphaHelix -68.71 -39.52 0.0 3SJM
ASG VAL A 462 17 H AlphaHelix -61.18 -41.05 19.6 3SJM
ASG GLN A 463 18 H AlphaHelix -66.30 -42.36 164.1 3SJM
ASG LYS A 464 19 H AlphaHelix -76.97 -47.78 140.6 3SJM
ASG TYR A 465 20 H AlphaHelix -102.74 -19.78 59.8 3SJM
ASG GLY A 466 21 T Turn 98.08 140.23 23.8 3SJM
ASG GLU A 467 22 T Turn -54.21 140.07 87.5 3SJM
ASG GLY A 468 23 T Turn 93.17 -17.08 43.2 3SJM
ASG ASN A 469 24 T Turn -95.81 60.83 90.0 3SJM
ASG TRP A 470 25 H AlphaHelix -72.55 -30.61 40.1 3SJM
ASG ALA A 471 26 H AlphaHelix -58.51 -45.08 74.9 3SJM
ASG ALA A 472 27 H AlphaHelix -66.41 -38.91 26.0 3SJM
ASG ILE A 473 28 H AlphaHelix -62.84 -44.27 0.0 3SJM
ASG SER A 474 29 H AlphaHelix -57.91 -35.40 38.8 3SJM
ASG LYS A 475 30 H AlphaHelix -83.19 -19.91 163.1 3SJM
ASG ASN A 476 31 H AlphaHelix -107.30 1.95 73.6 3SJM
ASG TYR A 477 32 T Turn -132.13 152.51 41.3 3SJM
ASG PRO A 478 33 T Turn -87.11 56.69 91.5 3SJM
ASG PHE A 479 34 T Turn -61.48 144.68 25.9 3SJM
ASG VAL A 480 35 T Turn -105.33 119.47 116.4 3SJM
ASG ASN A 481 36 T Turn 56.32 38.99 145.9 3SJM
ASG ARG A 482 37 T Turn -121.86 125.64 25.5 3SJM
ASG THR A 483 38 C Coil -86.59 170.04 73.4 3SJM
ASG ALA A 484 39 H AlphaHelix -62.92 -38.14 31.3 3SJM
ASG VAL A 485 40 H AlphaHelix -67.83 -36.21 88.9 3SJM
ASG MET A 486 41 H AlphaHelix -63.18 -44.71 63.2 3SJM
ASG ILE A 487 42 H AlphaHelix -57.81 -48.00 0.0 3SJM
ASG LYS A 488 43 H AlphaHelix -51.78 -44.47 67.7 3SJM
ASG ASP A 489 44 H AlphaHelix -72.34 -31.77 53.6 3SJM
ASG ARG A 490 45 H AlphaHelix -67.80 -37.33 24.5 3SJM
ASG TRP A 491 46 H AlphaHelix -63.76 -38.04 16.4 3SJM
ASG ARG A 492 47 H AlphaHelix -61.15 -45.26 112.4 3SJM
ASG THR A 493 48 H AlphaHelix -57.13 -45.46 48.5 3SJM
ASG MET A 494 49 H AlphaHelix -64.88 -38.50 3.4 3SJM
ASG LYS A 495 50 H AlphaHelix -57.41 -45.08 99.9 3SJM
ASG ARG A 496 51 H AlphaHelix -66.74 -29.04 172.9 3SJM
ASG LEU A 497 52 H AlphaHelix -98.82 13.11 107.1 3SJM
ASG GLY A 498 53 C Coil 61.31 35.39 65.1 3SJM
ASG MET A 499 54 C Coil -107.01 4.90 82.2 3SJM
ASG ASN A 500 55 C Coil -92.17 360.00 118.5 3SJM
ASG LYS B 446 1 C Coil 360.00 -36.37 243.8 3SJM
ASG LYS B 447 2 C Coil -133.68 103.69 199.0 3SJM
ASG GLN B 448 3 C Coil -104.16 112.64 113.0 3SJM
ASG LYS B 449 4 C Coil -60.69 139.89 157.0 3SJM
ASG TRP B 450 5 C Coil -76.09 130.77 39.4 3SJM
ASG THR B 451 6 C Coil -79.37 163.60 54.5 3SJM
ASG VAL B 452 7 H AlphaHelix -59.30 -42.01 109.4 3SJM
ASG GLU B 453 8 H AlphaHelix -62.38 -45.40 113.6 3SJM
ASG GLU B 454 9 H AlphaHelix -64.21 -37.70 16.6 3SJM
ASG SER B 455 10 H AlphaHelix -66.21 -38.42 8.2 3SJM
ASG GLU B 456 11 H AlphaHelix -62.03 -38.69 122.6 3SJM
ASG TRP B 457 12 H AlphaHelix -62.83 -46.26 51.7 3SJM
ASG VAL B 458 13 H AlphaHelix -56.91 -50.31 0.0 3SJM
ASG LYS B 459 14 H AlphaHelix -64.10 -41.43 65.1 3SJM
ASG ALA B 460 15 H AlphaHelix -61.84 -40.12 39.4 3SJM
ASG GLY B 461 16 H AlphaHelix -71.10 -36.02 0.0 3SJM
ASG VAL B 462 17 H AlphaHelix -60.81 -47.55 14.8 3SJM
ASG GLN B 463 18 H AlphaHelix -58.95 -36.31 139.1 3SJM
ASG LYS B 464 19 H AlphaHelix -79.59 -47.67 130.2 3SJM
ASG TYR B 465 20 H AlphaHelix -104.87 -18.64 79.9 3SJM
ASG GLY B 466 21 T Turn 95.48 145.60 27.9 3SJM
ASG GLU B 467 22 T Turn -53.12 138.25 101.6 3SJM
ASG GLY B 468 23 T Turn 97.89 -15.97 43.2 3SJM
ASG ASN B 469 24 T Turn -94.45 61.17 86.2 3SJM
ASG TRP B 470 25 H AlphaHelix -69.56 -37.79 40.9 3SJM
ASG ALA B 471 26 H AlphaHelix -61.25 -47.86 68.4 3SJM
ASG ALA B 472 27 H AlphaHelix -60.73 -40.02 36.1 3SJM
ASG ILE B 473 28 H AlphaHelix -66.71 -45.96 0.0 3SJM
ASG SER B 474 29 H AlphaHelix -53.65 -36.00 41.4 3SJM
ASG LYS B 475 30 H AlphaHelix -81.12 -18.79 183.0 3SJM
ASG ASN B 476 31 C Coil -109.33 -1.10 67.3 3SJM
ASG TYR B 477 32 T Turn -129.92 152.35 38.7 3SJM
ASG PRO B 478 33 T Turn -77.12 56.31 82.5 3SJM
ASG PHE B 479 34 T Turn -66.88 146.39 29.0 3SJM
ASG VAL B 480 35 T Turn -115.90 121.63 100.2 3SJM
ASG ASN B 481 36 T Turn 49.97 45.92 140.9 3SJM
ASG ARG B 482 37 T Turn -125.54 113.84 25.6 3SJM
ASG THR B 483 38 C Coil -77.75 165.16 76.3 3SJM
ASG ALA B 484 39 H AlphaHelix -54.98 -37.48 29.1 3SJM
ASG VAL B 485 40 H AlphaHelix -67.91 -38.45 91.4 3SJM
ASG MET B 486 41 H AlphaHelix -64.58 -37.78 81.7 3SJM
ASG ILE B 487 42 H AlphaHelix -64.77 -45.44 0.0 3SJM
ASG LYS B 488 43 H AlphaHelix -52.26 -47.83 65.2 3SJM
ASG ASP B 489 44 H AlphaHelix -67.48 -34.12 54.8 3SJM
ASG ARG B 490 45 H AlphaHelix -66.55 -39.64 38.9 3SJM
ASG TRP B 491 46 H AlphaHelix -62.36 -39.46 11.4 3SJM
ASG ARG B 492 47 H AlphaHelix -56.44 -46.71 114.3 3SJM
ASG THR B 493 48 H AlphaHelix -63.38 -45.31 50.3 3SJM
ASG MET B 494 49 H AlphaHelix -61.54 -43.10 6.8 3SJM
ASG LYS B 495 50 H AlphaHelix -59.29 -44.07 81.7 3SJM
ASG ARG B 496 51 H AlphaHelix -57.42 -37.87 174.2 3SJM
ASG LEU B 497 52 H AlphaHelix -91.95 5.12 110.0 3SJM
ASG GLY B 498 53 C Coil 76.29 25.20 59.4 3SJM
ASG MET B 499 54 C Coil -91.19 0.22 78.4 3SJM
ASG ASN B 500 55 C Coil -85.56 360.00 110.0 3SJM