Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/npidb/pdb/pdb_new/stride/3qmg.std.txt Дата изменения: Mon Oct 8 20:49:38 2012 Дата индексирования: Sun Feb 3 23:55:42 2013 Кодировка:

REM -------------------------------------------------------------------- 3QMG
REM 3QMG
REM STRIDE: Knowledge-based secondary structure assignment 3QMG
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 3QMG
REM 3QMG
REM Residue accessible surface area calculation 3QMG
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 3QMG
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 3QMG
REM 3QMG
REM ------------------------ General information ----------------------- 3QMG
REM 3QMG
HDR DNA BINDING PROTEIN/DNA 04-FEB-11 3QMG 3QMG
CMP MOL_ID: 1; 3QMG
CMP MOLECULE: CPG-BINDING PROTEIN; 3QMG
CMP CHAIN: A; 3QMG
CMP FRAGMENT: CXXC-TYPE ZN FINGER, RESIDUES 161-222; 3QMG
CMP SYNONYM: CXXC-TYPE ZINC FINGER PROTEIN 1, PHD FINGER AND CXX 3QMG
CMP CONTAINING PROTEIN 1; 3QMG
CMP ENGINEERED: YES; 3QMG
CMP MOL_ID: 2; 3QMG
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*AP*CP*GP*GP*TP*GP*GP*C)-3'; 3QMG
CMP CHAIN: B; 3QMG
CMP FRAGMENT: DNA (NONMETHYLATED CPG ISLAND); 3QMG
CMP ENGINEERED: YES; 3QMG
CMP MOL_ID: 3; 3QMG
CMP MOLECULE: 5'-D(*GP*CP*CP*AP*CP*CP*GP*TP*TP*GP*GP*C)-3'; 3QMG
CMP CHAIN: C; 3QMG
CMP FRAGMENT: DNA (NONMETHYLATED CPG ISLAND); 3QMG
CMP ENGINEERED: YES 3QMG
SRC MOL_ID: 1; 3QMG
SRC ORGANISM_SCIENTIFIC: HOMO SAPIENS; 3QMG
SRC ORGANISM_COMMON: HUMAN; 3QMG
SRC ORGANISM_TAXID: 9606; 3QMG
SRC GENE: CFP1, CGBP, CXXC1, PCCX1, PHF18; 3QMG
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 3QMG
SRC EXPRESSION_SYSTEM_TAXID: 511693; 3QMG
SRC EXPRESSION_SYSTEM_STRAIN: BL21; 3QMG
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 3QMG
SRC EXPRESSION_SYSTEM_PLASMID: BL21-V2R-PRARE2; 3QMG
SRC MOL_ID: 2; 3QMG
SRC SYNTHETIC: YES; 3QMG
SRC OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS.; 3QMG
SRC MOL_ID: 3; 3QMG
SRC SYNTHETIC: YES; 3QMG
SRC OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. 3QMG
AUT C.XU,C.BIAN,F.MACKENZIE,C.BOUNTRA,J.WEIGELT,C.H.ARROWSMITH, 3QMG
AUT A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) 3QMG
REM 3QMG
REM -------------------- Secondary structure summary ------------------- 3QMG
REM 3QMG
CHN /data/npidb/pdb/pdb_new/all/pdb3qmg.pdb A 3QMG
REM 3QMG
REM . . . . . 3QMG
SEQ 1 ARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARES 50 3QMG
STR TTTTGGGG TTTTHHHHH GGG TTTT TTTTTTTTTT GG 3QMG
REM 3QMG
REM 3QMG
SEQ 51 YK 52 3QMG
STR G 3QMG
REM 3QMG
REM 3QMG
REM 3QMG
LOC AlphaHelix ASP 185 A ASP 189 A 3QMG
LOC 310Helix GLU 173 A ARG 176 A 3QMG
LOC 310Helix LYS 191 A PHE 193 A 3QMG
LOC 310Helix GLU 214 A TYR 216 A 3QMG
LOC TurnIV CYS 169 A CYS 172 A 3QMG
LOC TurnIV CYS 181 A CYS 184 A 3QMG
LOC TurnIV ASN 197 A ARG 200 A 3QMG
LOC TurnI CYS 203 A ARG 206 A 3QMG
LOC TurnI ARG 204 A GLN 207 A 3QMG
LOC TurnIV CYS 208 A ARG 211 A 3QMG
LOC TurnI GLN 209 A ALA 212 A 3QMG
REM 3QMG
REM --------------- Detailed secondary structure assignment------------- 3QMG
REM 3QMG
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 3QMG
ASG ALA A 166 1 C Coil 360.00 -62.83 113.8 3QMG
ASG ARG A 167 2 C Coil -102.82 14.37 135.4 3QMG
ASG MET A 168 3 C Coil -135.88 117.99 90.0 3QMG
ASG CYS A 169 4 T Turn -75.52 -27.09 24.4 3QMG
ASG GLY A 170 5 T Turn 75.26 6.12 46.3 3QMG
ASG GLU A 171 6 T Turn -127.72 -10.45 155.0 3QMG
ASG CYS A 172 7 T Turn -93.28 168.91 16.4 3QMG
ASG GLU A 173 8 G 310Helix -52.74 -42.20 42.2 3QMG
ASG ALA A 174 9 G 310Helix -71.22 -35.66 2.4 3QMG
ASG CYS A 175 10 G 310Helix -70.36 -21.12 20.3 3QMG
ASG ARG A 176 11 G 310Helix -93.23 -17.35 160.1 3QMG
ASG ARG A 177 12 C Coil -59.72 138.73 115.7 3QMG
ASG THR A 178 13 C Coil -106.20 -12.60 121.0 3QMG
ASG GLU A 179 14 C Coil -113.40 123.92 148.3 3QMG
ASG ASP A 180 15 C Coil -65.58 145.56 35.9 3QMG
ASG CYS A 181 16 T Turn -78.28 -26.05 39.6 3QMG
ASG GLY A 182 17 T Turn 87.13 -1.63 17.7 3QMG
ASG HIS A 183 18 T Turn -131.53 -17.13 156.9 3QMG
ASG CYS A 184 19 T Turn -85.90 168.91 20.5 3QMG
ASG ASP A 185 20 H AlphaHelix -55.47 -43.88 65.6 3QMG
ASG PHE A 186 21 H AlphaHelix -63.41 -39.99 9.8 3QMG
ASG CYS A 187 22 H AlphaHelix -68.33 -41.30 0.0 3QMG
ASG ARG A 188 23 H AlphaHelix -67.38 -18.65 148.1 3QMG
ASG ASP A 189 24 H AlphaHelix -75.74 -30.31 9.7 3QMG
ASG MET A 190 25 C Coil -64.94 143.70 30.7 3QMG
ASG LYS A 191 26 G 310Helix -58.82 -34.70 75.4 3QMG
ASG LYS A 192 27 G 310Helix -63.97 -14.22 140.4 3QMG
ASG PHE A 193 28 G 310Helix -117.93 10.08 83.6 3QMG
ASG GLY A 194 29 C Coil 99.53 3.68 72.1 3QMG
ASG GLY A 195 30 C Coil -82.98 172.20 15.0 3QMG
ASG PRO A 196 31 C Coil -94.92 3.64 107.1 3QMG
ASG ASN A 197 32 T Turn 55.58 48.01 75.4 3QMG
ASG LYS A 198 33 T Turn -103.45 -16.76 71.7 3QMG
ASG ILE A 199 34 T Turn -104.96 -51.75 90.3 3QMG
ASG ARG A 200 35 T Turn 72.52 45.85 175.2 3QMG
ASG GLN A 201 36 C Coil -121.46 162.47 66.2 3QMG
ASG LYS A 202 37 C Coil -59.00 154.19 54.6 3QMG
ASG CYS A 203 38 T Turn -44.52 139.82 0.0 3QMG
ASG ARG A 204 39 T Turn -50.88 -35.53 69.7 3QMG
ASG LEU A 205 40 T Turn -79.01 -5.89 83.6 3QMG
ASG ARG A 206 41 T Turn -111.53 7.56 65.0 3QMG
ASG GLN A 207 42 T Turn -83.13 118.44 13.1 3QMG
ASG CYS A 208 43 T Turn -50.29 127.99 0.0 3QMG
ASG GLN A 209 44 T Turn -71.64 -21.31 111.1 3QMG
ASG LEU A 210 45 T Turn -84.28 -60.01 123.3 3QMG
ASG ARG A 211 46 T Turn -97.97 -6.69 118.9 3QMG
ASG ALA A 212 47 T Turn -90.61 146.89 4.9 3QMG
ASG ARG A 213 48 C Coil -38.90 137.58 131.2 3QMG
ASG GLU A 214 49 G 310Helix -70.53 -33.04 75.1 3QMG
ASG SER A 215 50 G 310Helix -77.00 -4.76 90.0 3QMG
ASG TYR A 216 51 G 310Helix -84.47 -30.26 37.1 3QMG
ASG LYS A 217 52 C Coil -64.00 360.00 108.5 3QMG