Classification:
| Class: | All beta proteins |
| Fold: | Common fold of diphtheria toxin/transcription factors/cytochrome f |
| Superfamily: | Common fold of diphtheria toxin/transcription factors/cytochrome f |
| Family: | Rel/Dorsal transcription factors, DNA-binding domain |
Alignment:
Information:
Download full alignment in MSF format: b_2_5_3.msfDownload structural alignment: b_2_5_3.ent
Quality of structural alignment: good
Method of structural alignment: CE
Description: specific contact with major groove of DNA by alpha helix and loop
| PDB: | Chain: | Residues: | Model number: |
| 1A02 | N | 399-576 | 1 |
| 1A3Q | A | 37-226 | 2 |
| 1A3Q | B | 37-226 | 3 |
| 1A66 | A | - | 4 |
| 1BVO | A | - | 5 |
| 1GJI | A | 7-181 | 6 |
| 1GJI | B | 7-181 | 7 |
| 1IKN | A | 19-191 | 8 |
| 1IMH | C | 188-367 | 9 |
| 1IMH | D | 188-367 | 10 |
| 1LE5 | A | 18-191 | 11 |
| 1LE5 | B | 38-250 | 12 |
| 1LE5 | E | 18-191 | 13 |
| 1LE5 | F | 38-250 | 14 |
| 1LE9 | A | 19-191 | 15 |
| 1LE9 | B | 39-250 | 16 |
| 1LE9 | E | 19-191 | 17 |
| 1LE9 | F | 39-250 | 18 |
| 1LEI | A | 19-191 | 19 |
| 1LEI | B | 39-250 | 20 |
| 1NFA | A | - | 21 |
| 1NFI | A | 20-189 | 22 |
| 1NFI | C | 20-189 | 23 |
| 1NFK | A | 39-250 | 24 |
| 1NFK | B | 39-250 | 25 |
| 1OOA | A | 38-250 | 26 |
| 1OOA | B | 38-250 | 27 |
| 1OWR | M | 395-575 | 28 |
| 1OWR | N | 395-575 | 29 |
| 1OWR | P | 395-575 | 30 |
| 1OWR | Q | 395-575 | 31 |
| 1P7H | L | 393-575 | 32 |
| 1P7H | M | 393-575 | 33 |
| 1P7H | N | 393-575 | 34 |
| 1P7H | O | 393-575 | 35 |
| 1PZU | B | 399-571 | 36 |
| 1PZU | D | 399-571 | 37 |
| 1PZU | H | 399-571 | 38 |
| 1PZU | I | 399-571 | 39 |
| 1PZU | L | 399-571 | 40 |
| 1PZU | M | 399-571 | 41 |
| 1RAM | A | 19-191 | 42 |
| 1RAM | B | 19-191 | 43 |
| 1S9K | C | 399-575 | 44 |
| 1SVC | P | 43-250 | 45 |
| 1VKX | A | 19-191 | 46 |
| 1VKX | B | 339-546 | 47 |
| 2AS5 | M | 396-575 | 48 |
| 2AS5 | N | 396-575 | 49 |
| 2I9T | A | 20-190 | 50 |
| 2I9T | B | 20-190 | 51 |
| 2O93 | L | 393-575 | 52 |
| 2O93 | M | 393-575 | 53 |
| 2O93 | O | 393-575 | 54 |
| 2RAM | A | 19-191 | 55 |
| 2RAM | B | 19-191 | 56 |
Example 1gji:
| Protein domain: | p65 subunit of NF-kappa B (NFKB), N-terminal domain |
| Species: | Chicken (Gallus gallus), C-rel [TaxId: 9031] |
