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SVETKA, a program for Analysis of Multiple Sequence Alignments |
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This is a database of some analysed
"model" alignments. These sets of amino acid sequences were taken
from COGs database.
Before tree reconstruction and further analysis these sets were refined
(for more details - see article)
in order to leave only one protein from every organism.
Results of the analysis of "model" alignments are acceptable from the
table below. Every alignment is called VALxxxx, where xxxx
is the number of the original COG (e.g. VAL1188 is
obtained from COG1188).
| Alignment name | Description of original COG |
Number of sequences |
Alignment length | Alignment quality |
| COG0166 | Glucose-6-phosphate isomerase | 40 | 648 | 0.265 |
| VAL1335 | Amidases related to nicotinamidase | 27 | 365 | 0.209 |
| VAL1188 | Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) | 18 | 141 | 0.525 |
| VAL0166 | Glucose-6-phosphate isomerase | 38 | 651 | 0.561 |
| VAL1745 | Uncharacterized ArCR; probably metal-binding | 4 | 102 | 0.819 |
| VAL0706 | Preprotein translocase subunit YidC | 34 | 1099 | 0.408 |
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