Example of an alignment

Документ взят из кэша поисковой машины. Адрес оригинального документа : http://monkey.belozersky.msu.ru/~dian/svetka/articles/COG0495.html
Дата изменения: Wed Apr 13 19:26:05 2005
Дата индексирования: Sat Dec 22 03:10:58 2007
Кодировка:

$Lebanonian Cedar$

Alignment COG0495
1403 positions
45 sequences
88 branches

$Lebanonian Cedar$

All tree
45 sequences
Supplied by 1403 positions
of alignment

$Left arrow$ Back to the article about COGs

$Left arrow$ Back to the article about this program

$Right arrow$ Scheme of the tree

To the alignment
$Arrow downstairs$

                 +-22-+-2--+-1--*Ta0777
                 |    |    |                                                                     
                 |    |    +-1--*TVN0761
                 |    |                                                                          
                 |    +-18-+-5--+-1--*MTH1508
                 |         |    |                                                                
                 |         |    +-2--+---*AF2421
                 |         |         |                                                           
                 |         |         +-2--+-0--*MJ0633
                 |         |              |                                                      
                 |         |              +-0--+-0--*PH0965
                 |         |                   |                                                 
                 |         |                   +-0--*PAB1782
                 |         |                                                                     
                 |         +-1--+-3--*APE1015
                 |              |                                                                
                 |              +-0--*YPL160w
                 |                                                                               
                 +-22-+-13-*aq_1770
                      |                                                                          
                      +-23-+-13-*aq_351
                           |                                                                     
                           +-14-+-8--*YLR382c
                                |                                                                
                                +-5--+-3--+-1--+-1--*CT209
                                     |    |    |                                                 
                                     |    |    +-0--*CPn0153
                                     |    |                                                      
                                     |    +-3--+-1--+-0--*Rv0041
                                     |         |    |                                            
                                     |         |    +-0--*ML0032
                                     |         |                                                 
                                     |         +-2--+-6--+-0--*TP0586
                                     |              |    |                                       
                                     |              |    +-2--+-1--*BB0251
                                     |              |         |                                  
                                     |              |         +-1--+-0--*L0352
                                     |              |              |                             
                                     |              |              +-0--*SPy0173
                                     |              |                                            
                                     |              +-3--+-0--+-0--*MG266
                                     |                   |    |                                  
                                     |                   |    +-0--*MPN384
                                     |                   |                                       
                                     |                   +-0--+-0--*UU371
                                     |                        |                                  
                                     |                        +-0--+-0--*BS_leuS
                                     |                             |                             
                                     |                             +-0--*BH3281
                                     |                                                           
                                     +-3--+-3--+-0--*DR2174
                                          |    |                                                 
                                          |    +-3--+-27-+-1--+-1--*PA3987
                                          |         |    |    |                                  
                                          |         |    |    +-2--+-2--*NMB1897
                                          |         |    |         |                             
                                          |         |    |         +-2--*NMA0559
                                          |         |    |                                       
                                          |         |    +-26-+-1--*XF2176
                                          |         |         |                                  
                                          |         |         +-28-+-0--*BU444
                                          |         |              |                             
                                          |         |              +-28-+-24-+-0--*leuS
                                          |         |                   |    |                   
                                          |         |                   |    +-0--*ZleuS
                                          |         |                   |                        
                                          |         |                   +-24-+-24-*VC0956
                                          |         |                        |                   
                                          |         |                        +-0--+-0--*HI0921
                                          |         |                             |              
                                          |         |                             +-0--*PM1214
                                          |         |                                            
                                          |         +-1--+-1--*TM0168
                                          |              |                                       
                                          |              +-1--+-4--*sll1074
                                          |                   |                                  
                                          |                   +-1--+-0--*Cj1091c
                                          |                        |                             
                                          |                        +-0--+-0--*jhp1452
                                          |                             |                        
                                          |                             +-0--*HP1547
                                          |                                                      
                                          +-0--+-0--*VNG2223G
                                               |                                                 
                                               +-2--+-1--*RP421
                                                    |                                            
                                                    +-1--+-0--*mll4077
                                                         |                                       
                                                         +-0--*CC3749

$Right arrow$ Alignment

Red-coloured are conserved positions
Green-coloured are positions, supplying this branch in sequences of this branch
Blue-coloured are positions, supplying this branch in other sequences of alignment

Here are shown only positions with numbers from 801 to 1000
Be attentive and don't use THIS html-page for researches
There are a lot of normal html-pages on this site

$Arrow upstairs$
To scheme

	801 805 810 815 820 825 830 835 840 845 850 855 860 865 870 875 880 885 890 895 900
	\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|
leuS	EWAKTTVN----GMPALRETDTFDTFMES------------SWYYARYTCPQY--------------------KEGMLDSEAANYWLP------------
ZleuS	QWAKTTVN----GMPALRETDTFDTFMES------------SWYYARYTCPEY--------------------KEGMLDSEAANYWLP------------
VC0956	EWAKTTFN----GEPALRETDTFDTFMES------------SWYYARYCSPQA--------------------DD-ILDPEKANYWLP------------
HI0921	NWAKTTFN----DAPALKETDTFDTFMES------------SWYYARYTCPQY--------------------QNGMLDAEEANYWLP------------
PM1214	EWAKTTYN----GQPALKETDTFDTFMES------------SWYYARYTSPKF--------------------AEAMLDADEANYWLP------------
NMB1897	EFYETACPCC--GGAAKRETDTMDTFMES------------SWYFFRYMSPKF--------------------SDGMVDPAAAKYWGA------------
NMA0559	EFYETTCPCC--GGAAKRETDTMDTFMES------------SWYFFRYMSPKF--------------------SDGMVDPAAAKYWGA------------
PA3987	EFYECNCPKC--GQPAKRETDTMDTFVES------------SWYFARYACPQF--------------------EGGMLDRKAADYWLP------------
XF2176	EWRKTTCPEC--GGPAERETDTFDTFMES------------SWYYARYTSPN---------------------AHEMLDKRAN-YWLP------------
BU444	KWAEIFIH----GKHAIREIDTFDTFMES------------SWYYARYTCPNF--------------------NTGMIDSIASKYWLP------------
jhp1452	SWKFAQCPKC--HKDALRETDTMDTFIQS------------SWYFLRYTTPKNQR------------------ENQAFDQNYLKYFMP------------
HP1547	SWKFTQCPKC--HKNALRETDTMDTFIQS------------SWYFLRYTTPKNQR------------------ENQAFDQNYLKYFMP------------
Cj1091c	TWKNCICPKC--GKEAQKESDTLDTFFES------------SWYFARFASDEKTW------------------QEKALDEKSVKYWMS------------
mll4077	TWRHVKCPQC--GRDARRETDTMDTFVDS------------SWYFARFTAPW---------------------AYEPTDPRAANEWLP------------
CC3749	TWRHTTCPSC--GGKAERETDTLDTFIDS------------SWYFARFADTQ---------------------AAEPVGKDAADHWLP------------
RP421	SWKYVNCPKC--DNSAIRETDTFDTFFES------------SWYFTRYCNSN---------------------AVEMTDKKACNYWLP------------
VNG2223G	DWKQTTCPDC--GAPAVRETDTMDTFLDS------------SWYFLRFASPAF--------------------DDAPFDTQRANDWLP------------
aq_351	EFVNTTCPKC--GGKARRETDTMDTFFDS------------SWYFLRFCDPKN--------------------DREPFSREKVDYWMP------------
sll1074	DWINVPCPSC--GKPARRETDTMDTFIDS------------SWYFLRYADAQN--------------------TELPFDGEKVAHWLP------------
TM0168	GFKKTKCPVC--GGEAQRETDTMDTFVDS------------SWYFLRYVNPHL--------------------EDKPFEPDDVNYWLP------------
DR2174	EWKTTTCPCC--GGPAERETDTMDTFVDS------------SWYMYRYLSPNY--------------------DGGPFDPSKA-GLLP------------
BS_leuS	EWVEVTDPETG--KKGRRETNTMPQWAGS------------CWYFLRYIDPHNP--------------------DQLASPEKLEKWLP------------
BH3281	DWLEVVDPVTG--KKGRRETNTMPQWAGS------------CWYYLRYIDPDNE--------------------RMIADPEKLKKWLP------------
L0352	DWLEVTR-ADG--LKGRRETNTMPQWAGS------------SWYYLRYIDPNNS--------------------EALADPELLKEWLP------------
SPy0173	DWLEVTR-EDG--VKGRRETNTMPQWAGS------------SWYYLRYIDPHNT--------------------EKLADEELLKQWLP------------
TP0586	TWLRVPCPQCA--SDAVRETNTMPQWAGS------------CWYYLRYMDPRNK--------------------TAFCAPEKERYWAP------------
BB0251	DWVNVKD------MGFTRETNTMPQWAGS------------CWYYLRYLDPKNS--------------------KEFANKKKIEYWMP------------
MG266	AWVNIVK--DN--IHYQRETNTMPQWAGS------------CWYYLGYLMLIKNPN--------------FWPIDSKEAKKLFDQYLP------------
MPN384	EWAKVKQ--GN--QTFTRETSTMPQWAGS------------CWYYLGYLMLINNEN--------------FWPIDSREAKDLFERYLP------------
UU371	EWLYVEI--DG--KKYRRETNTMPQWAGS------------SWYFLAYILKNEDGS--------------YTPLNSEEAKKRFAKWLP------------
CT209	EWVQVFDTETQ--RAGKRETHTMPQWAGS------------CWYYLRFCDAHNS--------------------AAPWAKEKEQYWMP------------
CPn0153	DWVHIYDEKTG--RPGCRETYTMPQWAGS------------CWYYLRFCDAHNS--------------------QLPWSKEKESYWMP------------
Rv0041	EWVHVDLDLGDGLKPYSRDTNVMPQWAGS------------SWYELRYTDPHNS--------------------ERFCAKENEAYWMGPRPAEHGPDDPG
ML0032	EWVHVELDLGDGLKPYSRDTNVMPQWAGS------------SWYELRYTDPHNS--------------------ERLCAKENEAYWMGPRPTEHGIDDPG
PH0965	EWVIESLSDS--TIYMAYYTISRHINKLRQ-----EGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYP------------
PAB1782	EWVIESLSDS--TIYMAYYTISRHINRLRE-----EGRLDPEKLTPEFFDYIFLEEFSEEREKELEKKTGIPAEIIHEMKEEFEYWYP------------
MJ0633	GWVIESLSDS--TIYPAYYTVAKYINQHN---------IKPEQLTLELFDYVFLGKGDVDK---IAKETGIPKDIIEGMRKEFIYYYP------------
AF2421	EWLIESLSDS--TIYMAYYILAKYINAGL---------LKAENMTPEFLDYVLLGKGEVGK---VAEASKLSVELIQQIRDDFEYWYP------------
MTH1508	RWIIEPLTDS--TIYMAYYTIAHRLREMD-----------AGEMDDEFFDAIFL-----DD---------SG--TFEDLREEFRYWYP------------
Ta0777	RWVIESLSDS--TIYPAVYTNSIPLRSLY----------ETGKLDDDAITRIFMN----GE---------PKNEDESEAKRQFEYWYP------------
TVN0761	RWVIESLSDS--TIYPAVYTTSIQMRKLY----------ENGKLDENAIERIFDG----GE---------VQNDEERTARNEFSYWYP------------
APE1015	EWVIESLSDS--TIYMAYYTIAKYTQHPEK-----YG-VEPEMLTPEVFDYVFLGAGDPGE---VSRRSGIPQGLLEEMRREFLYWYP------------
YLR382c	EFVNVACPSC--GSPAKRETDTMDTFIDS------------SWYYFRFLDPKN--------------------TSKPFDREIASKNMP------------
aq_1770	----------------------------------------------------------------------------------------------------
YPL160w	KYLVESLSDS--TIYQSFYTIAHLLFKDYYGNEIGPLGISADQMTDEVFDYIFQHQDDVKN-------TNIPLPALQKLRREFEYFYP------------
	\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|
	801 805 810 815 820 825 830 835 840 845 850 855 860 865 870 875 880 885 890 895 900
$Arrow upstairs$ Upstairs
	901 905 910 915 920 925 930 935 940 945 950 955 960 965 970 975 980 985 990 995 1000
	\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|
leuS	-VDIYIGGIEHAIMHLLYFRFFHKLMRDA----GMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDA-AGHELVYTGM
ZleuS	-VDIYIGGIEHAIMHLLYFRFFHKLMRDA----GMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDA-AGHELVYTGM
VC0956	-VDQYIGGIEHACMHLLYSRFFHKLLRDA----GYVKSDEPFKKLLCQGMVLADAFYYTNDKGGKEWVSPTEVKVERDGKGRIVSAVDA-TGRQVEHSGM
HI0921	-VDQYIGGIEHATMHLLYFRFFHKLLRDA----GFVTSEEPADKLLCQGMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDP-EGRELVHSGM
PM1214	-VDQYIGGIEHATMHLLYFRFFHKLLRDA----GFVTSDEPADKLLCQGMVLADAFYYTSPTNERIWVSPTEVTLERDEKGRILKAFDK-EGRELVHSGM
NMB1897	-VDQYIGGIEHAILHLLYARFFTKLMRDE----GLVNVDEPFERLLTQGMVVCETYYRENDKGGKDWINPADVELTFDDKGRPISAVLKADGLPVVISGT
NMA0559	-VDQYIGGIEHAILHLLYARFFTKLMRDE----GLVNVDEPFERLLTQGMVVCETYYRENDKGGKDWINPADVELTFDDKGRPVSAVLKVDGLPVVISGT
PA3987	-VDQYIGGIEHAILHLLYARFFHKLMRDE----GLVGSDEPFKNLLTQGMVVADTYYRTTANGGKDWFNPADVEVERDAKAKVVGARLKSDGQPVEIGGT
XF2176	-VDQYIGGIEHAILHLMYFRFYHKLMRDA----RLVDSDEPAINLLTQGMVIAETFYRKNPDGSKDWINPADVNVECDERGRITGATLISDGQPVLIGAT
BU444	-VDQYIGGIEHAIMHLMYFRFYHKLLRDF----KLVDFDEPVKNLLCQGMVLSEAFYKIDSNSQRKWFNSSSVLIKRNTKGEIIESHTQ-KGEKLIYAGM
jhp1452	-VDTYIGGIEHAILHLLYARFFTKALRDL----GYLHLDEPFKQLITQGMVLKDG------------------------------------------A--
HP1547	-VDTYIGGIEHAILHLLYARFFTKALRDL----GYLHLDEPFKQLITQGMVLKNG------------------------------------------A--
Cj1091c	-VDQYIGGIEHAILHLLYARFFQKALRDL----GYLTQNEPFDRLLTQGMVLKDG------------------------------------------A--
mll4077	-VDQYIGGIEHAILHLLYSRFFTRAMRAT----GHVDLAEPFKGLFTQGMVVHETYRVGGASNNGRWLSPAEVRIEDAEGKR--RAIEIATGEEAAIGSL
CC3749	-VDQYIGGVEHAILHLLYARFITRALKDE----GLLSVEEPFAGLFTQGMVTHEAYKN----EAGEWVEPSDVVITTEGSTR--TAKHAKTGAPIIIGDI
RP421	-VDKYIGGIEHAVMHLLYARFFTKLMNEH----NYVSIREPFKGLFTQGMVLHATYKD----ENNNWLYPAEVVKKGNE------FFHKENNTRVVQGRI
VNG2223G	-VDEYVGGDEHAVMHLLYSRFVTKAFADL----DMLEHREPFAGLTTQGMVLGED------------------------------G--------------
aq_351	-VDVYIGGIEHAVLHLLYARFFQKFLKDL----GLVRDDEPFEKLITQGMVLKKW------------------------------V--------------
sll1074	-VDQYVGGIEHAILHLLYSRFFTKVLADR----QLIPVKEPFQKLLTQGMVQGITYKN----PTTGKYVPAKDLQTGQQVIDPKDPKDPDSGEPLQVF-Y
TM0168	-VDQYIGGVEHAVLHLLYSRFVTKVLHDL----GYLNFDEPFTNLFTQGMIY----------------------------------KDG-----------
DR2174	-VDLYTGGIEHAILHLLYSRFWTKVMRDM----GLTTQSEPFARLRNQGMVLGED--------------------------------------------G
BS_leuS	-VDMYIGGAEHAVLHLLYARFWHKFLYDI----GVVPTKEPFQKLYNQGMILG---------------------ENNE----------------------
BH3281	-VDIYIGGAEHAVLHLLYARFWHKVLYDL----GVVPTKEPFQKLYNQGMILG---------------------ENNE----------------------
L0352	-VDIYVGGAEHAVLHLLYARFWHKVLYDL----GVVPTKEPFQKLFNQGMILGTSYRD-----HRGALVATDKVEKRDG-----GFYHMETG-EALEQAP
SPy0173	-VDIYVGGAEHAVLHLLYARFWHKVLYDL----GVVPTKEPFQKLFNQGMILGTSYRD-----SRGALVATDKVEKRDG-----SFFHVETG-EELEQAP
TP0586	-VALYVGGAEHAVLHLLYARFWHKVLYDL----GLVSTKEPFARLVNQGMITSYAYRR-----KNGALVPHDEVHTNAQG----TYVHARTG-EKLECVV
BB0251	-VDLYIGGAEHTVLHLLYSRFWHKVLYDL----GYVNTKEPFKKLINQGIITSFSYQK-----ENGVLIPNDQVIEKDN-----KFFDKKDN-KEVTQVI
MG266	-VDLYVGGAEHAVLHLLYARFWHKFLFDK----KLVSTKEPFQKLINQGMVLG----------------------PDGK---------------------
MPN384	-VDLYVGGAEHAVLHLLYARFWHQFLYQK----GIVTTKEPFKKLINQGMVLG----------------------PDGK---------------------
UU371	-VDVYIGGQEHAVLHLLYSRFWHRFLYDI----GVVPTKEPFYKVINQGMILG----------------------ENNE---------------------
CT209	-VDLYIGGAEHAVLHLLYARFWHQVFYEA----GIVSTPEPFKKLVNQGLVLATSYRI-----PGKGYIYPEIAKEENG------KWVAPSG-EELDVRQ
CPn0153	-VDLYIGGAEHAVLHLLYSRFWHRVFYDA----GLVSTPEPFKKLINQGLVLASSYRI-----PGKGYVSIEDVREENG------TWISTCG-EIVEVRQ
Rv0041	GVDLYVGGAEHAVLHLLYSRFWHKVLYDL----GHVSSREPYRRLVNQGYIQAYAYTD-----ARGSYVPAEQVIERGDR----FVYPGPDGEVEVFQEF
ML0032	GVDLYVGGAEHAVLHLLYARFWHKVLYDL----GHVSSREPYRRLINQGYIQAFAYTD-----AHGSYVPANQVFQRGDG----FFCPGPDGEIEVFQEF
PH0965	-LDWRCSGKDLIPNHLTFFIFNHVAIFR--------EEHWPKGIAVNGFGTLEGQ---------------------------------------------
PAB1782	-LDWRCSGKDLIPNHLTFFIFNHVAIFR--------EEHWPKGIAVNGFGTLEGQ---------------------------------------------
MJ0633	-VDWRCSAKDLIPNHLTFYIFNHVAIFP--------EEFWPRGIVVNGYVTIEGK---------------------------------------------
AF2421	-VDLRSSGKDLVANHLLFYLFHHVAIFP--------PDKWPRAIAVNGYVSLEGK---------------------------------------------
MTH1508	-LDWRLSAKDLIGNHLTFHIFHHSAIFP--------ESGWPRGAVVFGMGLLEGN---------------------------------------------
Ta0777	-VDIRLTAIPHISNHLSFYVLNHAAIFP--------KEKWPAGLIISGLVVSNGA---------------------------------------------
TVN0761	-VDIRLTAVPHISNHLSFYVMNHAAIFP--------PEKWPSGLIISGLVVSNGA---------------------------------------------
APE1015	-LDMRISGKDLIPNHLVFFIFHHTAIFP--------RELWPRAIGVNGWVLVAG----------------------------------------------
YLR382c	-VDIYIGGVEHAILHLLYSRFIAKFLGSINAWSDPAGIFEPFKKLVTQGMVQGKTYVDP---DSGKFLKPDELTFVNDSPDG--NTVIIKSNGKVPVVSY
aq_1770	-MKIKDFLQENKISVGDNAIFLLEKLGIK---------DENLIKFLEREIGES-----------------------------------------------
YPL160w	-LDVSISGKDLIPNHLTFFIYTHVALFP--------KKFWPKGIRANGHLMLNNS---------------------------------------------
	\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|
	901 905 910 915 920 925 930 935 940 945 950 955 960 965 970 975 980 985 990 995 1000
$Arrow upstairs$ Upstairs

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