Moscow Conference on
Computational Molecular Biology
(MCCMB'15)

Poster session will take place on July 16, 16:40 till 18:40, in the building of Biological Faculty of the MSU (no.8 on the map).

The size of a poster stand is horizontally oriented A0 (120 cm width, 90 cm height)

List of posters

This list in xls

Poster #	Name	Section	Poster title
1	Shlikht Anatoliy	algorithms	Automated working place of bioinformatics
2	Taranov Evgeny	algorithms	DegenPrimer: a software for in silico simulation of multiplex PCR with degenerate primers
3	Golosova Olga	algorithms	NGS Data Analysis with Unipro UGENE
4	Kalinina Anastasia	algorithms	The method for homologous recombination detection within bacterial species
5	Klimchuk Olesya	algorithms	OLESA: Operon Loci Examination and Sorting Application
6	Demidov German	algorithms	A Novel Statistical Algorithm to Detection of Large-scale Deletions in PCR-enriched Target Sequencing Data
7	Demidov German	algorithms	Stochastic modeling of enhancer molecular configurations
8	Fedonin Gennadiy	algorithms	Characterization of highly diverse viral populations by fast reference selection and accurate read mapping
9	Flegontov Pavel	algorithms	A read mapper for investigation of U-insertion/deletion RNA editing
10	Gerasimov Evgeny	algorithms	Human-guided genome assembly finishing software
11	Lyubetsky Vassily	algorithms	A method of detecting local gene synteny rearrangement
12	Poverennaia Irina	algorithms	Investigation of exon-intron structure multiple alignments
13	Soldatov Ruslan	medical genetics	Differential activity of polymerase ? associated with replication timing and gene bodies in humans: evidence from mutational signatures
14	Nagaev Boris	algorithms	NPG-explorer, a tool for creating and exploring nucleotide pangenome for closely related prokaryotic genomes
15	Zhuravleva Ekaterina	epigenetics and chromatin structure	Evaluation of the positional correlations between whole genome annotations: novel statistical approaches development, advancement of the GenometriCorr methodologies
16	Stavrovskaya Elena	epigenetics and chromatin structure	StereoGene: a tool for fast correlation assessment and its application to the analysis of bivalent histone methylation
17	Galitsyna Aleksandra	epigenetics and chromatin structure	Spatial configuration of the alpha-globin gene domain in three cell types of G.gallus
18	Khrameeva Ekaterina	epigenetics and chromatin structure	Active chromatin regions are sufficient to define borders of topologically associated domains in D. melanogaster interphase chromosomes
19	Lifanov Alexander	epigenetics and chromatin structure	Conserved Regions of DNA Forming Nucleosomes in Transcriptional Regulatory Modules Are Close in Space
20	Kulakova Ekaterina	epigenetics and chromatin structure	Computer analysis of chromosome contacts obtained by ChIA-PET and Hi-C technologies
21	Klink Galya	evolution	Analysis of prevalence of epistasis on the basis of huge phylogenies
22	Potapova Nadezhda	evolution	Accumulation of mutations in nonsense alleles of Drosophila melanogaster
23	Rusinov Ivan	evolution	Estimation of selection pressure on degenerate sequences in genomes: choice of method
24	Terekhanova Nadezhda	evolution	Local variation of the mutation rate across the primate phylogeny
25	Teterina Anastasia	evolution	The evolution of cod protein coding genes: intra- and interspecies levels
26	Savitskaya Ekaterina	evolution	Autoimmune primed CRISPR adaptation in I-E and I-F systems: comparative analysis of new spacer selection mechanisms
27	Novakovsky German	evolution	Phylogenomic analysis of the type I NADH:quinone-oxidoreductase
28	Bondareva Olga	evolution	Study of lactobacteria's genomes evolution
29	Tarasov Oleg	evolution, taxonomy	Sequencing genomes of Saccharomyces cerevisiae strains belonging to the Peterhof Genetic Collection helps elucidate the origin of several widely used laboratory strains
30	Troitsky Aleksey	evolution, taxonomy	Moss phylogeny reconstructed from 24 full mitogenome sequences using new "pangenome" based approach.
31	Korvigo Ilia	evolution, taxonomy	The Evolutionary Space of bacterial 16S rRNA gene
32	Baranova Mariia	medical and population genetics	Extremely high polymorphism level in fungi S. commune: the cause and the importance for population genomics
33	Bai Haihua	medical genetics	Identification of the susceptibility gene loci associated with ischemic stroke in a Mongolian population in China
34	Belenikin Maxim	medical genetics	Studying of epileptic encephalopathies using NimbleGen-based target panels
35	Belenikin Maxim	medical genetics	Finding of compound heterozygous mutations in the ALDH7A1 gene. Clinical case
36	Reznik Aleksandr	medical genetics	Evolutionary analysis of NPC1 improves accuracy of predicting disease causing missense mutations
37	Sergeev Roman	medical genetics	Mutation analysis of M. tuberculosis nucleotide sequences from patients in Belarus
38	Bizin Ilya	medical genetics, cancer	A bioinformatics pipeline for analysing germline mutations in human breast cancer by exome sequencing
39	Milchevskaya Vladislava	medical genetics, cancer	Improved gene annotations for microarray based identifications of reporter metabolites in recurrent breast cancer
40	Moshkovskii Sergei	medical genetics, cancer	Exome-based proteogenomics of human cancer cell lines
41	Terskikh Anastasia	medical genetics, cancer	Analysis of mutational landscape of patients with chronic lymphocytic leukemia
42	Popova Anfisa	metagenomics	BCVISS: a web application for analyzing mixed 16S rRNA gene chromatograms
43	Dubinkina Veronika	metagenomics	Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis of human gut microbiota
44	Garushyants Sofya	metagenomics	Comparative metagenomic profiling of two pilot-scale microbial fuel cells treating industrial wastewaters
45	Kiseleva Larisa	metagenomics
46	Kovarsky Boris	metagenomics	Recent genomic changes in the human gut microbiome
47	Shavkunov Konstantin	metagenomics	Bacteria revived from an ancient bison gut
48	Kazakov Sergey	metagenomics	MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data
49	Ivashchenko Anatoliy	miRNA	Binding sites of miRNAs with transcription factors' genes of Camelus ferus and Homo sapiens
50	Ivashchenko Anatoliy	miRNA	Features of miR-574-5p and miR-574-3p binding sites in mRNA of target genes
51	Prosvirov Kirill	miRNA	At least 6% of conserved miRNAs` sites are misaligned.
52	Niyazova Raigul	miRNA, cancer	Interactions between miRNAs and mRNAs of apoptosis genes in lung cancer
53	Niyazova Raigul	miRNA, cancer	The interaction of miRNAs with mRNAs of the cell cycle genes in lung cancer
54	Hadarovich Anna	protein function	Quantitative comparison of functional properties in protein-protein complexes
55	Petrov Artem	protein function	A novel Arg H52 and Tyr H33 conservative binding motif in antibodies: a correlation between sequence of immunoglobulins and their binding properties
56	Alexandrov Anton	protein function, algorithms	Computational prediction of MHC class I tumor-specific antigens
57	Argun Dmitriy	protein function, algorithms	Sequence analysis in short functionally important peptides by combination of bioinformatics, molecular dynamics and testing of biological activity
58	Bogatyreva Natalya	protein structure	Methods for protein folding rate prediction
59	Dudko Anna	protein structure	TOM-complex structure modeling
60	Gushchina Irina	protein structure	Molecular model of tyrosyl-DNA phosphodiesterase 1 for a structure-based screening for its inhibitors
61	Guzenko Dmytro	protein structure	Constrained Modelling of an Intermediate Filament Dimer
62	Ivankov Dmitry	protein structure	Testing applicability of machine learning for protein folding rate prediction
63	Milchevskiy Yury	protein structure	Local protein structure prediction based on physicochemical properties of amino acids
64	Nyporko Alex	protein structure	The 8-oxo-7,8-dihydro-2?-dGTP behavior in active site of human DNA polymerase ?: structural investigation in silico
65	Rogacheva Olga	protein structure	cAMP-induced conformational changes of Protein Kinase A Ia A-domain
66	Scherbakov Kirill	protein structure	Docking method reveals binding patterns of ?,?-dioc acids by albumin
67	Shalaeva Daria	protein structure	Modeling the role of positively charged moieties in hydrolysis of nucleoside triphosphates
68	Tarnovskaya Svetlana	protein structure	STRUCTURAL ANALISYS OF MUTATIONS ASSOSIATED WITH IDIOPATIC RESTRICTIVE CARDIOMYOPATHY IN CYTOSKELETAL AND SARCOMERIC PROTEINS
69	Uroshlev Leonid	protein structure	Prediction of cation binding sites using structural water
70	Aksianov Evgeniy	protein structure, algorithms	Sequence alignment of non-superposable beta-sheets
71	Bykov Alexander	regulation of transcription	Changing the transcriptional activity of genome regulatory loci by PCR-mutagenesis
72	Khoroshkin Matvei	regulation of transcription	Transcriptional Regulation of the Carbohydrate Metabolism in the Bifidobacterium Genus
73	Suvorova Inna	regulation of transcription	Reconstruction of GABA and taurine metabolic regulons, controlled by MocR-subfamily transcription factors
74	Tutukina Maria	regulation of transcription	Revealing and comparing regulons of homologues transcription factors UxuR and ExuR in Escherichia coli.
75	Zharov Ilya	regulation of transcription	Correlations of substitutions predict specific protein-DNA contacts in the MerR family of transcriptional factors
76	Dergilev Arthur	regulation of transcription	Mining of nucleotide sequences containing clusters of transcription factor binding sites
77	Zalevsky Arthur	RNA and DNA structure	Unraveling CD spectra of G-quadruplexes
78	Lomzov Alexander	RNA and DNA structure	Hybridization energy of native and modified DNA duplexes calculated using molecular dynamics
79	Chervontseva Zoe	RNA structure	The evolution of 5' untranslated regions' structure in Bacilli and Clostridia genomes
80	Moldovan Mikhail	RNA structure	Comparative genomics analysis of thiamine-pyrophosphate riboswitches in fungal genomes
81	Baulin Eugene	RNA structure	Long-range stem-based RNA tertiary motifs
82	Vasileva Aleksandra	RNA structure	Secondary structures in the coding regions of mRNAs: literature survey and comparison of prediction methods
83	Vinogradova Svetlana	RNA structure	Probing-directed structured elements detection in RNA sequences
84	Volkova Oxana	RNA structure	Estimation of translational importance of mammalian mrna nucleotide sequence characteristics based on ribosomal profiling data
85	Lavrekha Viktoriya	systems biology, modeling	Mathematical modeling of morphogenetic regulation of the meristem zone formation in the plant root
86	Novikov Konstantin	systems biology, modeling	A new method for identification of molecular motor role in endocytosis
87	Spirov Alexander	systems biology, modeling	Dynamic modeling of genes for spatial patterning in embryo development on the example of the Drosophila segmentation gene hunchback
88	Dymova Arina	systems biology, networks	Combined sequenced-based model of the Drosophila gap gene network
89	Kogan Valeria	systems biology, networks	Critical dynamics of gene networks is behind ageing and Gompertz law
90	Kondratova Maria	systems biology, networks	Atlas of Cancer Signaling Network: from intracellular networks to tumoral microenviroment
91	Misko Vladislav	systems biology, networks	The construction of gene networks for Mycobacterium Tuberculosis by analyzing next-generation sequencing data
92	Mitra Chanchal	systems biology, networks	Modelling the Metabolic Pathways
93	Sergushichev Alexey	systems biology, networks	Globally connected networks of GEO transcriptional profiles reveal hypothesis generation and drug repurposing potential
94	Shagimardanova Elena	systems biology, networks	Comparative metabolomic profiling of desiccation tolerant midge
95	Cherkasov Alexander	transcriptomics	Whole genome analysis of variety and expression of heat-shock protein encoding genes during desiccation stress in an anhydrobiotic midge Polypedium vanderplanki
96	Gazizova Guzel	transcriptomics	How to escape from muscle atrophy: whole-genome analysis of gene expression in edible dormouse (Glis glis) during immobilization
97	Kuznetsova Svetlana	transcriptomics	Transcriptomic of the leech Ozobranchus jantseanus
98	Naumenko Sergey	transcriptomics	Building the set of orthologous genes for 66 Gammaridae transcriptomes
99	Nesmelov Alexander	transcriptomics	Antioxidant system of desiccation-tolerant insect Polypedilum vanderplanki
100	Spitsina Anastasia	transcriptomics, algorithms	Computer tool for gene expression data processing and correlation analysis
101	Garanina Irina	transcriptomics, splicing	Splicing sites evolution in primates prefrontal cortex
102	Speshilov Gleb	transcriptomics, splicing	Comprehensive comparison of RNA-seq based methods for differential splicing analysis
103	Vinogradov Dmitry	transcriptomics, splicing	Alternative splicing in hepatocellular carcinoma
104	Ivshina Anna		Genome wide survival prediction and network analysis stratifies breast cancers into three reproducible subclasses determined by novel genetic grading signatures
105	Kashyn Ivan		Computer-Aided Identification of Small-Molecule HIV-1 Entry Inhibitors Mimicking Cellular Receptor CD4
106	Kashyn Ivan		Molecular Dynamics Simulations to Identify the Binding Hot Spots of the HIV-1 Coat Protein GP41 and Broadly Neutralizing Antibody 10E8
107	Kashyn Ivan		Virtual Screening of Novel Anti-HIV-1 Agents Based on a Broadly Neutralizing Antibody VRC01 and Evaluation of Their Potential Inhibitory Activity by Molecular Docking and Dynamics Simulations
108	Kuznetsov Vladimir		Quantitative Structural Model for Prediction and Analysis of R-loop Forming Sequences in the Genomes
109	Lopatina Elena		Evolution of Burkholderia spp.
110	Mavropulo-Stoliarenko Grigoriy		Atom subtypes present in protein structures: introducing dynamic atom similarity measure
111	Minochkina Aleksandra		Rational drug design of ligands for MD2/TLR4/CD14 signalling cascade as perspective adjuvants of anti-bacterial vaccines
112	Predeus Alexandr		Globally connected networks of GEO transcriptional profiles reveal hypothesis generation and drug repurposing potential
113	Zolotareva Olga		Bioinformatics Analysis of Active Chromatin Allelic imbalance Across Genome: Testing Cerebral Neurons in Schizophrenia and Autism
114	Ershova Anna		GATC avoidance in bacteria with DpnI/DpnII complementary R-M systems