Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mccmb.belozersky.msu.ru/2013/MCCMB13_Program_2307e.pdf Дата изменения: Tue Jul 23 20:24:53 2013 Дата индексирования: Thu Feb 27 20:37:21 2014 Кодировка:

6th International Moscow Conference on Computational Molecular Biology (MCCMB'13) Moscow, Russia, July 25-28, 2013 http://mccmb.belozersky.msu.ru
25th 9.00 10.00 10.20 Thursday 10.00 10.20 11.40

Registration and morning coffee Opening Chromatin structure Peter V. Kharchenko*, Artyom A. Alekseyenko, Andrey A. Gorchakov, Mitzi I. Kuroda Dirar Homouz, Gang Chen, Andrzej Kudlicki* Yuriy L. Orlov*, Dmitri A. Afonnikov, Nariman R. Battulin, Oleg L. Serov, Nikolay A. Kolchanov, Guoliang Li, Yijun Ruan Coffee break Chromatin (and RNA) structure Maxim Imakaev*, Geoffrey Fudenberg, Leonid Mirny Bayesian Analysis of Mass Spec Enrichment in integrative studies of chromatin-associated complexes Maximum Parsimony Interpretation of Chromatin Capture Experiments 3D organization of chromosomes mediated by RNAPII complex contacts in human genome

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Malgorzata E. Rowicka* Leonid Uroshlev*, Vsevolod Makeev, Julie Bernauer Lunch break Regulation of transcription

Chromosomal Architecture Changes Upon Cell Differentiation Landscape of double-stranded DNA breaks in human genome and its correlation with sequence motifs and DNA bendability Determination of type and position of ions in RNAion complexes using empirical potential method


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Gary D. Stormo* Ivan V. Kulakovskiy*, Victor G. Levitsky, Dmitry G. Oshchepkov, Ilya E. Vorontsov, Vsevolod J. Makeev Coffee break and Poster session Buses depart for the Conference dinner Hangover coffee Functional genomics and genome structure Serafim Batzoglou*

Improved methods for determining TF specificity From ChIP-Seq data to improved transcription factor binding sites models

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Shuai Jiang, Max A. Alekseyev* Oleg Gusev*, Elena Shagimardanova, Yoshitaka Suetsugu, Noriaki Satoh, Maria Logacheva, Alexei Penin, Dmitry Alexeev, Vadim Govorun, Georgy Bazykin, Takahiro Kikawada Phillip George, Chantal Vaury, Silke Jensen, Igor V. Sharakhov* Coffee break Genomics and epigenomics Vadim N. Gladyshev* Tatiana Subkhankulova* Yulia A. Medvedeva*, Abdullah Khamis, Ivan V. Kulakovskiy, Wail Ba-Alawi, Md. Shariful I. Bhuyan, Hideya Kawaji, FANTOM consortium, Timo Lassmann, Alister R.R. Forrest, Matthias Herbers, Vladimir B. Bajic Lunch break

Genome Evolution During Progression to Breast Cancer Simultaneous Solution to Synteny Blocks Construction and Genome Rearrangements Problems Drying without dying: multi-omics analysis of mechanisms of anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki (Diptera) Organization and evolution of piRNA clusters in mosquitoes

Understanding aging and control of lifespan through genome analyses Epigenetic profiling of cardiac stem cells from the adult mammalian heart

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Effects of cytosine methylation on transcription factor binding sites


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Viral genomics Thomas Rattei* Alexander Goultiaev (Gultyaev)*, RenИ C.L. Olsthoorn Andrey Chursov*, Dmitrij Frishman, Alexander Shneider Coffe break Viral genomics Alice McHardy* Irena Artamonova* Morning coffee Genomics, genetics and evolution Konstantin V. Gunbin, Mikhail P. Ponomarenko, Valentin V. Suslov*, Dmitry A. Afonnikov

Dmitry Frishman Comparative genomics and metagenomics of viruses Computational search for functional structures in viral RNA genomes Computational Analysis of Influenza RNA Structures: A New Hypotheses for Old Problems Dmitry Frishman Computational methods for studying the phenotypic evolution of human influenza A viruses CRISPR-systems in microbiomes

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Eran Elhaik, Tatiana Tatarinova* Alexey Kondrashov* Vladimir Seplyarskiy*, Alexey Kondrashov, Timothy James Coffee break Genomics, genetics and evolution Shamil Sunyaev* Ekaterina E. Khrameeva*, Mikhail S. Gelfand, Philipp Khaitovich

Human brain origin and the evolution of -boxes of protein-coding genes expressed in brain Geographic Population Structure (GPS) of worldwide human populations infers biogeographical origin down to home village Accumulation of deleterious alleles in modern human populations High-resolution study of recombination in a highly polymorphic fungus Schizophyllum commune

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Human germ line and somatic mutation rates: evolution, biology and statistical genetics Association between changes in lipid catabolism and increased gene flow from Neanderthals to Europeans


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Adam D. Hayward, Virpi Lummaa, Georgii A. Bazykin* Lunch break Networks Olga Troyanskaya* Andrei Zinovyev*, Inna Kuperstein, Emmanuel Barillot, Wolf-Dietrich Heyer Paola Vera-Licona*, Andrei Zinovyev, Eric Bonnet, Inna Kuperstein, Olga Kel, Alexander Kel, Thierry Dubois, Gordon Tucker, Emmanuel Barillot Ekaterina Myasnikova* Coffee break Protein phosphorylation networks Andrei V. Karginov, Denis Tsygankov*, Timothy C. Elston, Klaus M. Hahn Jonathan Mangion (LifeTechnologies)* Morning coffee Algorithms Dmitri Papatsenko*, Henia Darr, Ivan Kulakovskiy, Vsevolod Makeev, Ihor Lemischka Alexander Artyomenko, Nicholas Mancuso, Pavel Skums, Ion Mandoiu, Alex Zelikovsky* Anton Korobeynikov*, Alla Lapidus, Pavel Pevzner Ivan Antonov*, Pavel Baranov, Mark Borodovsky Marina Fridman*, Nina Oparina, Ivan Kulakovskiy,

Accumulation of deleterious mutations and fitness in a pre-industrial human population

Tissue-specific understanding of human disease from functional genomic data Mechanisms of genetic interactions and cancer treatment A Signaling Pathway Rationale for the Design of Combination Therapies for Cancer Identifiability analysis and predictive power of the gene circuit model

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Dissecting kinase-mediated downstream pathways with temporal and spatial control of its activation Ion Torrent ­ Gene Panels and Infectious Disease

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Buffering meta-stable pluripotent states in embryonic stem cells kGEM: An Expectation Maximization Error Correction Algorithm for Next Generation Sequencing of Amplicon-based Data SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing Detection of frameshifts and improving genome annotation Origin and expansion of microsatellites is associated


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Vsevolod Makeev Coffee break Systems biology and evolution Philipp Khaitovich* Olga Ozoline*, Konstantin Shavkunov, Olga Glazunova, Eugeny Fesenko, Maria Tutukina, Sergey Kiselev, Sergey Antipov, Victoria Pokusaeva, Valeriy Panyukov Valentina Boeva*, Tatiana Popova, Kevin Bleakley, Andrei Zinovyev, Jean-Philippe Vert, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot Lunch break Functional bioinformatics and systems biology Dmitry N. Ivankov*, Samuel Payne, Stefano Bonissone, Si Wu, Roslyn Brown, Ljiljana Pasa-Toli, Matthias Birschenk, Iris Antes, Richard Smith, Michael Y. Galperin, Pavel A. Pevzner, Dmitrij Frishman Audrey M. Michel, Pavel V. Baranov* Sulbha Choudhari, Ruchi Lohia, Andrey Grigoriev* Inna Kuperstein* , David P. A. Cohen, Laurence Calzone, Maia Chanrion, Daniel Louvard, Sylvie Robine, Andrei Zinovyev, Emmanuel Barillot Charles Cantor* Coffee break Alternative splicing

with conversion more than with replication

Insights into human evolution from metabolome studies

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Promoter islands as instruments of bacterial evolution Predicting copy number alterations and allelic status in cancer genomes with Control-FREEC using whole genome or exome sequencing data

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Proteogenomic analysis of bacterial signal peptides Computational model of translation initiation leaky scanning and its application to ribo-seq data How to sequence a glacier: a computational biologist's rough guide Modelling signalling networks for explaining synthetic gene interactions leading to invasive phenotype in colon cancer mouse model Detection of RNA sequences in living cells by RNA mediated protein complementation


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Pavel Mazin*, Philipp Khaitovich Dmitri Pervouchine*, Sarah Djebali, Alessandra Breschi, Julien Lagarde, Thomas Gingeras, Roderic GuigС Ivan P. Gorlov*, Alexei N. Fedorov, Christopher Logothetis, Olga Y. Gorlova, Christopher Amos Closing Farewell party

Conserved age-related splicing regulation in primate brains. Comparative splicing in hu Genes with a evolutionary deep sequencing survey of alternative man and mouse large intronic burden show a higher conservation on protein level