MCCMB'11

List of Posters

The size of a poster stand is horizontally oriented A0 (120 cm width, 90 cm height)

Hall	#	Author	Title	Section
BBA	1	Alex Nyporko	Selection of optimal parameters for molecular dynamics computation: generating of NMR-comparable trajectories	Protein structure
BBA	2	Anastasya Anashkina	Key Residues in Protein-DNA Interactions	Protein structure
BBA	3	Dmitry Kirsanov	NPIDB, a database of structures of nucleic acid - protein complexes	Protein structure
BBA	4	Anna Popinako	Homology Modeling and Comparative Analysis of Serotonin 5-HT3 Receptor Structure in Native and Modified Forms	Protein structure
BBA	5	Denis Antonets	TEpredict - software for predicting T-cell epitopes: an update	Protein structure
BBA	6	Denis Antonets	Theoretical study of structural features of variola virus CrmB protein	Protein structure
BBA	7	Evgeniy Aksianov	Automatic Detection of Architectures in 3D Protein Structures of All-Beta and Alpha/Beta Classes	Protein structure
BBA	8	Kirill Medvedev	Molecular dynamics simulation of Nip7 proteins demonstrates importance of hydrophobic interaction for protein stability at high pressure	Protein structure
BBA	9	Larisa Kordyukova	Search of Amino Acid Residues Crucial for Influenza Virus Hemagglutinin Anchoring Segment Organization and Interaction with Matrix M1 Protein	Protein structure
BBA	10	Leonid Uroshlev	GPGPU-assisted prediction of ion binding sites in proteins	Protein structure
BBA	11	Mikhail Chumakov	3-D complexes of VirE2 protein originated from Agrobacterium tumefaciens and evaluation of his pore-forming ability	Protein structure
BBA	12	N.S. HariNarayana Moorthy	Thiosemicarbazone Derivatives as Potent RNR Inhibitors: In Silico Based Pharmacophore, Binding Mode and Toxicity Analysis	Protein structure
BBA	13	N.S. HariNarayana Moorthy	Binding Feature Analysis of hERG Blockers: A Computational Study	Protein structure
BBA	14	Nurbubu Moldogazieva	Homology-based modeling of 3D Structure of Human Alpha-fetoprotein in Complex with Estrogens	Protein structure
BBA	15	Pavel Semenyuk	Structure heterogeneity of particles of flexuous plant viruses	Protein structure
BBA	16	Sergey Feranchuk	An Internet Service On A Folding Energy Estimate	Protein structure
BBA	17	Tatyana Ostroverkhova	The Novel Approach to the Cytochrome c tertiary structure design	Protein structure
BBA	18	Victoria Sokolik	Protein is coded in genome and synthesized in ribosomes as a structural template of a rotameric version sequence of peptide bound configuration	Protein structure
BBA	19	Vladimir Arzhanik	Multiple structural alignment of α/β hydrolase-fold enzymes and bioinformatic analysis of catalytically important residues	Protein structure
BBA	20	Yuri Porozov	Structural modeling of BCR-ABL drug resistance mutations	Protein structure
BBA	21	Yuriy Gusev	Supramolecular complexes of the A. tumefaciens virulence protein VirE2	Protein structure
BBA	22	Daniil Naumoff	Hierarchical classification of glycoside hydrolases	Protein families
BBA	23	Daniil Naumoff	COG2342 is a family of hypothetical glycoside hydrolases	Protein families
BBA	24	Anna Ershova	Diversity of the restriction-modification systems in full prokaryotic genomes	Protein families
BBA	25	Daria Shalaeva	Bioinformatic Analysis of Structural Factors of Selective Inhibition in Human Protein Kinase C Family	Protein families
BBA	26	Iakov Davydov	Ribosomal multicopy protein study	Protein families
BBA	27	Konstantin Gunbin	GTF2I domain: structure, evolution and function	Protein families
BBA	28	Robert Pesch	Complementing functional annotations and synonyms using cross-species transfer and ortholog mappings	Protein families
BBA	29	Andrei Alexeevski	Protein Sequence Alignments Comparison and Verification	algorithms
BBA	30	Mikhail Roytberg	Using of PREFAB for analysis of amino-acid sequence alignment algorithms.	algorithms
BBA	31	Yury Pekov	Nhunt: new program for DNA sequence similarity searching	algorithms
BBA	32	Kirill Romanenkov	Comparison of quality and performance of parallel algorithms for Multiple Sequence Alignment	algorithms
BBA	33	Mikhail Roytberg	An algorithm for exact probability of pattern occurrences calculation	algorithms
BBA	34	Mikhail Roytberg	Statistics of RNA structures	algorithms
BBA	35	Jean YvesSemegni	NASP: A parallel program for identifying evolutionarily conserved nucleic acid secondary structures from sequence alignments	algorithms
BBA	36	Anna Nikulova	An approach to predict cis-regulatory modules and identify conserved regulatory grammar in eukaryotic genomes	algorithms
BBA	37	Ivan V. Kulakoskiy	Preferred Pair Distance Templates for Analysis of Transcription Regulation Code	algorithms
BBA	38	Nadezda Bykova	Inference of ancestral states for character evolution: the case of uncertain data at terminal nodes	Evolution, phylogeny, taxonomy
BBA	39	Sergei Spirin	Comparison of phylogeny reconstruction programs on sequences of fungal protein domains	Evolution, phylogeny, taxonomy
BBA	40	Mikhail Roytberg	Analysis of distance matrices and construction of phylogenic trees	Evolution, phylogeny, taxonomy
BBA	41	Alexander Bolshoy	Phylogenomics and Robust Construction of Prokaryotic Evolutionary Trees	Evolution, phylogeny, taxonomy
BBA	42	Ilya Shlyakhter	SimZoom: An Exploration Environment for Coalescent Simulation Traces	Evolution, phylogeny, taxonomy
BBA	43	Roman Sergeev	Statistical Approach to Mutation Analysis of HIV-1 Primary Proteins	Evolution, phylogeny, taxonomy
BBA	44	Yulia Medvedeva	Decreased mutation rate of 5mCpG within CpG islands in the human genome	Evolution, phylogeny, taxonomy
BBA	45	Alexander Panchin	Human mutagenesis in context	Evolution, phylogeny, taxonomy
BBA	46	Marina Fridman	The role of recombination in the multiplication of Alu-associated microsatellites	Evolution, phylogeny, taxonomy
BBA	47	Olga Vakhrusheva	Functional conservation beyond sequence conservation	Evolution, phylogeny, taxonomy
BBA	48	Nina Popova	Weaker selection against internal stop codons in genes with a close paralog in Drosophila melanogaster	Evolution, phylogeny, taxonomy
BBA	49	Konstantin Gunbin	Deep inside into invertebrate evolution: the molecular evolution modes of orthologous protein sequences	Evolution, phylogeny, taxonomy
BBA	50	Konstantin Gunbin	Deep inside into vertebrate evolution: the molecular evolution modes of orthologous protein sequences	Evolution, phylogeny, taxonomy
BBA	51	Mariya Baranova	Population genetic analysis of ongoing two-nucleotide codon substitutions in D.melanogaster	Evolution, phylogeny, taxonomy
BBA	52	Nadezhda Terekhanova	Heterotachy of double substitutions in neighboring nucleotides in non-coding sequence	Evolution, phylogeny, taxonomy
BBA	53	Aleksandra Akhmadullina	Lack of dominance effect revealed by comparison of frequencies of nonsense mutations between autosomes and X-chromosome in Drosophila melanogaster	Evolution, phylogeny, taxonomy
BBA	54	Vladimir Seplyarskiy	Small scale heterogeneity in mutation rate and mutation biases in Drosophila	Evolution, phylogeny, taxonomy
BBA	55	Laszlo Bartha	Phylogenetic utility of the low-copy nuclear gene LFY intron 2 in plant molecular phylogenetics as exemplified in Astragalus (Fabaceae)	Evolution, phylogeny, taxonomy
BBA	56	Anna Vilnet	Molecular phylogenetic approach to study of the earliest land plants: the family Cephaloziaceae Mig. s.l. (Marchantiophyta)	Evolution, phylogeny, taxonomy
BBA	57	Masoud Sheidaei	Molecular phylogeny of the genus Silene L. Section Auriculatae (Caryophyllaceae)	Evolution, phylogeny, taxonomy
BBA	58	Vladimir V. Aleoshin	"Metazoa-specific" genes in the early opisthokonts	Evolution, phylogeny, taxonomy
BBA	59	Aleksey Komissarov	Classification of tandemly repeated DNA families in the mouse genome	Genome statistics
BBA	60	Alexander Ignatov	New Clustered Regularly Interspaced Short Palindrome Repeats in Xanthomonads	Genome statistics
BBA	61	Andriy Sukhodub	The abundance of '2As' in different species.	Genome statistics
BBA	62	Anton Pheophilov	Inverted Repeats in Surveyed and Sequenced Cattle and Sheep	Genome statistics
BBA	63	Bela AlbertMarosi	Identification of partial MHC class II B exon 2 sequences in 3 European Ranidae species	Genome statistics
BBA	64	Dmitrijs Lvovs	Tandem repeat polymorphisms in the human genome	Genome statistics
BBA	65	Anna Kaznadzey	Evolution study and classification of carbohydrate metabolism genome loci in bacteria	Genomics
BBA	66	Ekaterina Ermakova	CodY regulon in Bacillaceae	Genomics
BBA	67	Ilya Zharov	Regulation of Multidrug Resistance Genes by Transcriptional Factors from the MerR Family	Genomics
BBA	68	Irina Rodionova	Characterization of novel components of sugar catabolic pathways in Thermotoga maritima identified by integrative genomic approach	Genomics
BBA	69	Marat Kazanov	Functional annotation of regulons controlled by RNA regulatory elements in complete bacterial genomes	Genomics
BBA	70	Svetlana Vinogradova	Genome-wide analysis of possible ncRNA structures	Genomics
BBA	71	Vita Stepanova	Genomic analysis of transcriptional regulation of aromatic amino acid metabolism in gamma-proteobacteria	Genomics
BBA	72	Vasily Lyubetsky	Bacterial type RNA polymerase sigma subunits and their specific promoters in plastids	Genomics
BBA	73	Semen Leyn	Reference collection of transcriptional regulons in Bacillales family of bacteria	Genomics
BBA	74	Semen Leyn	Comparative genomic reconstruction of N-acetylgalactosamine catabolic pathways and transcriptional regulons in Proteobacteria	Genomics
BBA	75	Maya Polishchuk	Clusters of Splicing Regulatory Protein Pasilla Are Overrepresented in D. Melanogaster Splice Junctions	Genomics
BBA	76	Artem Artemov	Kinetic model explains correlation between DNA methylation and tissue-specific alternative splicing	Genomics
BBA	77	Mikhail Roytberg	Comparative analysis of genomes of 12 species of Drosophila	Genomics
BBA	78	Mikhail Roytberg	The influence of intron length on the intron phase distribution	Genomics
BBA	79	Yulia M.Suvorova	Detecting genes with triplet periodicity splicing	Genomics
BBA	80	Mikhail Nikitin	Prediction of neuropeptide genes in Trichoplax genome	Genomics
BBA	81	Sofya Garushyants	Horizontal gene transfer and genome evolution in Methanosarcina	meta- and pan-genomes
BBA	82	Evgeny Gordienko	Evolution of bacterial pan-genomes	meta- and pan-genomes
BBA	83	Evgeny Andronov	An evolutionary space for microbial evolution and community structure analysis	meta- and pan-genomes
BBA	84	Ilya Altukhov	Web-application for comparative structural and functional analysis of prokaryotic genomes sequencing data	meta- and pan-genomes
BBA	85	Sharmila Mande	Metagenomics Analysis Platform for Automatic Annotation of Metagenome Sequences obtained from Next Generation Sequencing Technologies	meta- and pan-genomes
BBA	86	Larisa Kiseleva	Metagenomic analysis of exoelectrogenic bacteria that power microbial fuel cells	meta- and pan-genomes
BBA	87	Alexander Martynov	Effect of Bacillus thuringiensis Cry3Aa toxin on Tenebrio molitor transcriptome composition	transcriptomics
BBA	88	Ancha Baranova	Gene expression profile of the tumor as a composite biomarker	transcriptomics
BBA	89	Nina Oparina	Housekeeping genes in the human genome: what about cancer?	transcriptomics
BBA	90	Nina Oparina	New reference gene for various human cancers gene expression normalization: RPN1 testing on lung and kidney cancers	transcriptomics
BBA	91	Pavel Mazin	Splicing differences in primate brain development	transcriptomics
BBA	92	Akash Ranjan	From Protein-Protein Interaction Prediction to Elucidation of Missing Metabolic Pathway Enzymes	Pathways. metabolomics
BBA	93	Aleksander Dorodnov	A Quantitative Systems Pharmacology Model Provides Insights into Phosphate Homoeostasis through Multiple Interacting Pathways	Pathways. metabolomics
BBA	94	Artem Demidenko	Systems Modeling of EphB4/ephrinB2 Signaling Pathways	Pathways. metabolomics
BBA	95	Olga Krebs	The Just Enough Results Model (JERM) for Systems Biology Data	Pathways. metabolomics
BBA	96	Ralf Hofestadt	Visualization and Analysis of a Cardio Vascular Disease-related Biological Network combining Text Mining and Data Warehouse Approaches	Pathways. metabolomics
BBA	97	Robert Kuffner	Time-sensitive inference of gene regulatory networks	Pathways. metabolomics
BBA	98	Stefka Tyanova	Phosphorylation Dynamics During the Cell Cycle Shows Preferences for Different Protein Structural Propensities	Pathways. metabolomics
M1	99	Ekaterina Yu. Tsareva	Pharmacogenetics of disease modifying treatment in Russian patients with multiple sclerosis	medical and population genetics
M1	100	Jonathan Sebat	Duplications of the neuropeptide receptor gene VIPR2 confer significant risk for schizophrenia.	medical and population genetics
M1	101	Inna Belfer	Analysis Of Genome-Wide Association Data In Chronic Sciatica Pain Cohort	medical and population genetics
M1	102	Inna Pertsovskaya	Modeling Type I interferon pathway for the study of Multiple Sclerosis	medical and population genetics
M1	103	Irina Elsukova	The genetic structure of musk oxen populations, using ISSR-PCR markers	medical and population genetics
M1	104	Lily Nizolenko	Effect of intervention in the protection of the population of the Novosibirsk region of the influenza epidemic	medical and population genetics
M1	105	Lily Nizolenko	Scenarios of development of epidemic of the smallpox which has arisen because of bioterrorist attack in St.-Petersburg	medical and population genetics
M1	106	Mariya Elkina	Microevolutionary changes in conditions of chronic environmental stress	medical and population genetics
M1	107	Michail Vasiliev	Detection of the set of features for discrimination of normal and high grade cancer tissues based on the Affymetrix microarray expression data.	medical and population genetics
M1	108	Alexandra Taisova	Experimental Evidence of Optimal Interfacing of Subantennae in Superantenna	Molecular biology and biophysics
M1	109	Alexey Moskalev	Biomarkers of aging and aging-related pathologies	Molecular biology and biophysics
M1	110	Mikhail Kuravsky	Investigation of NAD+ binding to glyceraldehyde 3-phosphate dehydrogenase	Molecular biology and biophysics
M1	111	Victoria Toporova	Construction and expression in E. coli and cyanobacteria of the deletion derivatives of the cyanobacterium Synechocystis sp. PCC 6803 drgA gene and its hybrids with gfp	Molecular biology and biophysics
M1	112	Anna Popenko	Classification and evolution of DNA methyltransferases
M1	113	Natalia Zakharevich	Structural classification of bacterial serine/threonine protein kinases
M1	114	Eugenia Krutinina	Electrostatic properties complement the DNA bending in the Escherichia coli O157:H7 pO157 plasmid BNT2 promoter functioning
M1	115	Eugenia Krutinina	New insights into protein-DNA electrostatic interactions: beyond promoters to transcription factors binding sites
M1	116	Galina Kravatskaya	Coexistence of different base periodicities in prokaryotic genomes as related to DNA curvature, supercoiling, and transcription
M1	117	Daria Dibrova	Comparative analysis of lipid biosynthesis in Archaea and Bacteria: What was the structure of first membrane lipids?