| age |
author |
description |
| Mon, 14 Jan 2013 19:48:26 +0400 |
Boris Nagaev |
conservative_groups.js: IE fix (no extra comma in array) |
| Mon, 14 Jan 2013 05:07:37 +0400 |
Boris Nagaev |
structure: put comment about commen 'by_block' to output pymol file |
| Mon, 14 Jan 2013 04:31:05 +0400 |
Boris Nagaev |
pair-cores/web: add description to all options |
| Mon, 14 Jan 2013 03:13:04 +0400 |
Boris Nagaev |
pair-cores/web: change background of example and add left margin to it |
| Mon, 14 Jan 2013 03:01:58 +0400 |
Boris Nagaev |
pair-cores/web: add sequence names format instruction |
| Mon, 14 Jan 2013 02:54:31 +0400 |
Boris Nagaev |
pair-cores/web: add link to gcore.html from text 'geometrical core' |
| Mon, 14 Jan 2013 02:44:43 +0400 |
Boris Nagaev |
pair-cores/web: add header "Description" before example and description |
| Mon, 14 Jan 2013 02:42:49 +0400 |
Boris Nagaev |
pair-cores/web: use built-in Wt text->html conversion for log |
| Mon, 14 Jan 2013 02:40:59 +0400 |
Boris Nagaev |
pair-cores/web: compare-aln-3d uses built-in Wt text->html instead of sed |
| Mon, 14 Jan 2013 02:31:29 +0400 |
Boris Nagaev |
pair-cores/web: set min-width of section boxes (inputs, Outputs) to 500px |
| Mon, 14 Jan 2013 02:19:31 +0400 |
Boris Nagaev |
geometrical_cores: if ignore_one_ss, discard only for alpha-helix or beta-chain |
| Fri, 11 Jan 2013 21:25:33 +0400 |
Boris Nagaev |
structure/blocks_to_pymol: create object for each sequence |
| Fri, 11 Jan 2013 20:47:28 +0400 |
Boris Nagaev |
JS alignment viewer: mark conservative columns with * instead of black bgcolor |
| Fri, 11 Jan 2013 20:14:28 +0400 |
Boris Nagaev |
structure/blocks_to_pymol/pair_fit: refine columns filter |
| Fri, 11 Jan 2013 19:58:32 +0400 |
Boris Nagaev |
pair-cores/web: add detailed description |
| Fri, 11 Jan 2013 18:28:45 +0400 |
Boris Nagaev |
JS alignment viewer: conservative groups taken from Blosum62 |
| Fri, 11 Jan 2013 18:27:32 +0400 |
Boris Nagaev |
JavaScript alignment viewer: fix groups highlighting |
| Thu, 10 Jan 2013 20:02:04 +0400 |
Boris Nagaev |
pair-cores/web: add short description after page header |
| Thu, 10 Jan 2013 19:53:07 +0400 |
Boris Nagaev |
pair-cores/web: use stable branch of wt-classes |
| Thu, 10 Jan 2013 19:28:03 +0400 |
Boris Nagaev |
pair-cores/web: substitute example of input with one with more blocks in output |
| Thu, 10 Jan 2013 18:55:47 +0400 |
Boris Nagaev |
pair-cores/web: add lang switcher |
| Thu, 10 Jan 2013 18:46:31 +0400 |
Boris Nagaev |
pair-cores/web: add RFBR grant |
| Thu, 10 Jan 2013 18:42:20 +0400 |
Boris Nagaev |
pair-cores/web: remove pair-HTML output, disable by default other pair outputs |
| Thu, 10 Jan 2013 18:31:53 +0400 |
Boris Nagaev |
pair-cores/web: add Run/Cancel button near Refresh button |
| Thu, 10 Jan 2013 02:53:07 +0400 |
Boris Nagaev |
add utility script pair_cores/blocks_to_html.py |
| Wed, 09 Jan 2013 17:57:24 +0400 |
Boris Nagaev |
alignment html template: remove duplicated </table> |
| Fri, 21 Dec 2012 15:08:34 +0400 |
Boris Nagaev |
add util pfamdomains2fasta |
| Fri, 21 Dec 2012 15:07:05 +0400 |
Boris Nagaev |
pair_cores: add error messages to rethrown exceptions |
| Fri, 21 Dec 2012 15:04:53 +0400 |
Boris Nagaev |
structure.py: add error messages to asserts |
| Wed, 28 Nov 2012 18:26:43 +0400 |
Boris Nagaev |
pair-cores/web: fix header of compare-aln-3d |
| Wed, 28 Nov 2012 17:16:10 +0400 |
Boris Nagaev |
pair-cores/web: implement compare-aln-3d.cpp application |
| Wed, 28 Nov 2012 17:15:45 +0400 |
Boris Nagaev |
pair-cores/web: add script to deploy compare-aln-3d.wt |
| Wed, 28 Nov 2012 14:42:15 +0400 |
Boris Nagaev |
pair-cores/web: copy pair-cores.cpp to compare-aln-3d.cpp |
| Wed, 28 Nov 2012 00:35:35 +0400 |
Boris Nagaev |
pair_cores/web: add note about support by Ministry of Education and Science |
| Thu, 04 Oct 2012 02:46:09 +0400 |
Boris Nagaev |
fix a typo in description of columns_as_lists() |
| Mon, 16 Jul 2012 20:06:26 +0400 |
Daniil Alexeyevsky |
util.Silence: remove temporary file in all cases, not just if an exception occured |
| Fri, 29 Jun 2012 19:37:28 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Fri, 29 Jun 2012 19:34:21 +0400 |
Daniil Alexeyevsky |
utils/markup_to_file: added ability to specify multiple markup file names for batch tranformation as positional arguments |
| Tue, 19 Jun 2012 16:55:44 +0400 |
Mmmasha! |
Automated merge with ssh://kodomo/allpy |
| Tue, 19 Jun 2012 16:55:37 +0400 |
Mmmasha! |
markup_to_html. Html template files and path to imported module can be passed on the command line. In the imported module can be function "init" which takes an alignment for adding some attributes after alignment is loaded. |
| Tue, 19 Jun 2012 15:51:12 +0400 |
Mmmasha! |
Messages about wrong descripitons while reading markup. |
| Thu, 14 Jun 2012 20:24:26 +0400 |
Daniil Alexeyevsky |
Reverted draft changes to allpy/util.py accidentally added to commit [bc1a7595d9d1] |
| Thu, 14 Jun 2012 19:05:28 +0400 |
Daniil Alexeyevsky |
Clean rewrite or markup_to_file.py util; --markup is now optional and allows specifying multiple markups as a comma-separated list |
| Sun, 10 Jun 2012 16:08:47 +0400 |
Daniil Alexeyevsky |
Partially reversed [afed1f] (see #49) |
| Sun, 10 Jun 2012 15:20:37 +0400 |
Daniil Alexeyevsky |
Collected Debian changelog entries from released revisions |
| Sun, 10 Jun 2012 15:11:54 +0400 |
Daniil Alexeyevsky |
Re-packaged for Debian (previous packaging erroneously excluded codes.py)1.4.3 |
| Sat, 09 Jun 2012 21:23:11 +0400 |
Daniil Alexeyevsky |
markup_to_file did not actually work until now, rather it removed all gaps from alignment |
| Sat, 09 Jun 2012 21:14:55 +0400 |
Daniil Alexeyevsky |
Fixed indentation in markup_to_file.py |
| Sat, 09 Jun 2012 21:03:13 +0400 |
Daniil Alexeyevsky |
Fixed a serious bug with saving sequence markups when alignment does not have all of the sequence monomers |
| Sat, 09 Jun 2012 19:15:44 +0400 |
Daniil Alexeyevsky |
Added to dna.Sequence method `translate` to translate into protein sequence using given genetic code |
| Tue, 05 Jun 2012 15:22:43 +0400 |
Boris Burkov |
Check, whether alignment_index_markup was already created in blocks_finder.1.4.2 |
| Sun, 03 Jun 2012 23:55:00 +0400 |
Daniil Alexeyevsky |
allpy logo: better font sizes |
| Sun, 03 Jun 2012 23:45:21 +0400 |
Daniil Alexeyevsky |
Re-painted allpy logo (the idea is exactly the same) |
| Sun, 03 Jun 2012 12:09:41 +0400 |
Daniil Alexeyevsky |
Added meta-processor `FixNamesAndOrder`; called from `Needle` and `Muscle` (closes #134) |
| Sat, 02 Jun 2012 22:33:50 +0400 |
Daniil Alexeyevsky |
processors.Needle: also check that sequence name is not empty (needle fails on those too) |
| Sat, 02 Jun 2012 22:15:27 +0400 |
Daniil Alexeyevsky |
Reorganized tests to make them more readable |
| Sat, 02 Jun 2012 21:56:13 +0400 |
Daniil Alexeyevsky |
Removed tests for long-removed "ss" markup |
| Sat, 02 Jun 2012 19:52:06 +0400 |
Daniil Alexeyevsky |
Renamed test_fastq -> test_io_fastq for uniformity |
| Sat, 02 Jun 2012 19:33:42 +0400 |
Daniil Alexeyevsky |
Added backreferences to `Seqeunce`s from `Monomer`s (closes #49) |
| Sat, 02 Jun 2012 19:29:40 +0400 |
Daniil Alexeyevsky |
Added test for `dna.Sequence.reverse_complemented()` |
