Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/2fmt.pdb1.pdb.txt Дата изменения: Fri Mar 22 14:06:09 2013 Дата индексирования: Fri Feb 28 19:25:43 2014 Кодировка:

/pdb/2fmt.pdb1.pdb
2fmt.pdb1.out
2 # duplex
49 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
2 67 0 # 1 | ...1>C:...2_:[..G]G-----C[..C]:..71_:C<...1 0.60 0.54 11.00 8.94 -2.77
3 66 0 # 2 | ...1>C:...3_:[..C]C-----G[..G]:..70_:C<...1 1.20 0.99 20.10 8.93 -0.81
4 65 0 # 3 | ...1>C:...4_:[..G]G-----C[..C]:..69_:C<...1 0.56 0.54 10.64 8.84 -2.82
5 64 0 # 4 | ...1>C:...5_:[..G]G-----C[..C]:..68_:C<...1 0.78 0.53 11.85 9.08 -2.57
6 63 0 # 5 | ...1>C:...6_:[..G]G-----C[..C]:..67_:C<...1 0.45 0.36 16.66 8.98 -3.00
7 62 0 # 6 | ...1>C:...7_:[..G]G-----C[..C]:..66_:C<...1 1.07 0.53 14.66 9.47 -2.14
47 61 0 # 7 | ...1>C:..49_:[..G]G-----C[..C]:..65_:C<...1 0.59 0.28 6.44 9.22 -3.52
48 60 0 # 8 | ...1>C:..50_:[..U]U-*---G[..G]:..64_:C<...1 2.14 0.85 7.95 8.73 1.23
49 59 0 # 9 | ...1>C:..51_:[..C]C-----G[..G]:..63_:C<...1 0.55 0.40 6.57 8.81 -3.32
50 58 0 # 10 | ...1>C:..52_:[..G]G-----C[..C]:..62_:C<...1 0.50 0.21 7.06 9.38 -3.73
51 57 9 # 11 x ...1>C:..53_:[..G]G-----C[..C]:..61_:C<...1 0.37 0.24 1.67 9.31 -4.07
21 12 0 # 12 | ...1>C:..22_:[..G]G-----C[..C]:..13_:C<...1 1.29 0.34 9.98 8.73 -2.52
22 11 0 # 13 | ...1>C:..23_:[..C]C-----G[..G]:..12_:C<...1 0.39 0.19 12.82 8.85 -3.58
23 10 0 # 14 | ...1>C:..24_:[..U]U-----A[..A]:..11_:C<...1 0.64 0.48 5.68 8.76 -3.11
24 9 0 # 15 | ...1>C:..25_:[..C]C-----G[..G]:..10_:C<...1 0.89 0.27 2.35 8.95 -3.46
25 42 0 # 16 | ...1>C:..26_:[..G]G-*---A[..A]:..44_:C<...1 1.54 0.10 20.52 10.79 -0.23
26 41 0 # 17 | ...1>C:..27_:[..U]U-----A[..A]:..43_:C<...1 0.36 0.22 21.12 8.83 -3.14
27 40 0 # 18 | ...1>C:..28_:[..C]C-----G[..G]:..42_:C<...1 0.96 0.87 26.06 8.92 -1.01
28 39 0 # 19 | ...1>C:..29_:[..G]G-----C[..C]:..41_:C<...1 0.41 0.35 8.13 9.07 -3.49
29 38 0 # 20 | ...1>C:..30_:[..G]G-----C[..C]:..40_:C<...1 0.78 0.40 11.85 8.89 -2.83
30 37 9 # 21 x ...1>C:..31_:[..G]G-----C[..C]:..39_:C<...1 0.57 0.15 20.22 8.60 -3.12
14 46 1 # 22 + ...1>C:..15_:[..G]G-**+-C[..C]:..48_:C<...1 2.87 0.15 5.36 8.89 0.43
19 52 1 # 23 + ...1>C:..19_:[..G]G-----C[..C]:..56_:C<...1 1.28 0.50 50.18 9.35 1.79
31 33 1 # 24 + ...1>C:..33_:[..U]U-*---A[..A]:..35_:C<...1 8.81 0.78 45.07 5.78 11.63
74 139 0 # 25 | ...1>D:...2_:[..G]G-----C[..C]:..71_:D<...1 0.59 0.46 17.25 8.69 -2.63
75 138 0 # 26 | ...1>D:...3_:[..C]C-----G[..G]:..70_:D<...1 0.92 0.84 20.02 8.95 -1.40
76 137 0 # 27 | ...1>D:...4_:[..G]G-----C[..C]:..69_:D<...1 0.76 0.52 9.13 8.96 -2.75
77 136 0 # 28 | ...1>D:...5_:[..G]G-----C[..C]:..68_:D<...1 0.61 0.42 11.00 9.10 -3.01
78 135 0 # 29 | ...1>D:...6_:[..G]G-----C[..C]:..67_:D<...1 0.43 0.34 9.20 9.03 -3.43
79 134 0 # 30 | ...1>D:...7_:[..G]G-----C[..C]:..66_:D<...1 1.11 0.56 15.44 9.34 -2.00
119 133 0 # 31 | ...1>D:..49_:[..G]G-----C[..C]:..65_:D<...1 1.15 0.40 10.70 9.27 -0.50
120 132 0 # 32 | ...1>D:..50_:[..U]U-*---G[..G]:..64_:D<...1 2.14 0.59 2.72 8.69 0.45
121 131 0 # 33 | ...1>D:..51_:[..C]C-----G[..G]:..63_:D<...1 0.89 0.57 2.17 9.06 -2.85
122 130 0 # 34 | ...1>D:..52_:[..G]G-----C[..C]:..62_:D<...1 0.45 0.13 10.47 9.41 -3.78
123 129 9 # 35 x ...1>D:..53_:[..G]G-----C[..C]:..61_:D<...1 0.51 0.27 6.73 9.58 -3.63
93 84 0 # 36 | ...1>D:..22_:[..G]G-----C[..C]:..13_:D<...1 1.56 0.40 10.45 8.75 -0.11
94 83 0 # 37 | ...1>D:..23_:[..C]C-----G[..G]:..12_:D<...1 0.31 0.07 8.06 8.86 -4.15
95 82 0 # 38 | ...1>D:..24_:[..U]U-----A[..A]:..11_:D<...1 0.30 0.11 2.48 8.69 -4.36
96 81 0 # 39 | ...1>D:..25_:[..C]C-----G[..G]:..10_:D<...1 0.82 0.42 7.49 8.97 -2.97
97 114 0 # 40 | ...1>D:..26_:[..G]G-*---A[..A]:..44_:D<...1 1.51 0.46 25.69 10.69 0.71
98 113 0 # 41 | ...1>D:..27_:[..U]U-----A[..A]:..43_:D<...1 0.59 0.54 20.83 8.87 -2.29
99 112 0 # 42 | ...1>D:..28_:[..C]C-----G[..G]:..42_:D<...1 0.70 0.68 22.90 8.96 -1.80
100 111 0 # 43 | ...1>D:..29_:[..G]G-----C[..C]:..41_:D<...1 0.16 0.12 11.01 8.93 -4.05
101 110 0 # 44 | ...1>D:..30_:[..G]G-----C[..C]:..40_:D<...1 0.69 0.11 6.72 8.92 -3.75
102 109 9 # 45 x ...1>D:..31_:[..G]G-----C[..C]:..39_:D<...1 0.72 0.69 20.42 8.91 -1.87
86 118 0 # 46 | ...1>D:..15_:[..G]G-**+-C[..C]:..48_:D<...1 2.76 0.40 7.55 8.99 0.93
87 127 9 # 47 x ...1>D:..16_:[..C]C-**+-A[..A]:..59_:D<...1 7.77 1.81 58.99 6.97 14.33
91 124 1 # 48 + ...1>D:..19_:[..G]G-----C[..C]:..56_:D<...1 1.38 0.37 55.03 9.47 1.86
103 105 1 # 49 + ...1>D:..33_:[..U]U-*---A[..A]:..35_:D<...1 9.54 1.57 36.09 5.63 13.49
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 9 non-Watson-Crick base-pairs, and 10 helices (5 isolated bps)
##### Helix #1 (11): 1 - 11 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (10): 12 - 21 ***broken O3'[i] to P[i+1] linkage***
##### Helix #3 (1): 22
##### Helix #4 (1): 23
##### Helix #5 (1): 24
##### Helix #6 (11): 25 - 35 ***broken O3'[i] to P[i+1] linkage***
##### Helix #7 (10): 36 - 45 ***broken O3'[i] to P[i+1] linkage***
##### Helix #8 (2): 46 - 47 ***broken O3'[i] to P[i+1] linkage***
##### Helix #9 (1): 48
##### Helix #10 (1): 49