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Дата изменения: Tue Feb 1 19:32:47 2005
Дата индексирования: Mon Oct 1 19:32:22 2012
Кодировка:
Internet Services
Homepage
Belozersky Institute GeneBee Russian EMBnet Node

Biocomputing WWW services

Databanks screening:

a) by similarity

BLAST at NCBI,  EBI,  Institute Pasteur,  ....
Fasta at EBI,  Institute Pasteur,  ....
MPsrch  (Smith-Waterman algorithm)

b) by names, definitions, keywords etc.

Entrez at NCBI
SRS (Sequence Retrievial System) at EBI,  DKFZ,  HGMP,  CNB,  Infobiogen,  CAOS-CAMM

Alignment:

ClustalW  at  EBI,  Institute Pasteur
DIALIGN
Match-Box at University of Namur, Belgium
SIM : pairwise alignment of protein sequences (ExPASy, Switzerland)

Other:

READSEQ: sequence format conversion
MFold: RNA secondary structure prediction
RNA analysis : mfold, RNAfold (Vienna package), tRNAscan-SE, FAStRNA; Institute Pasteur
Primer3 (MIT, USA): design PCR primers
Search Genes and Coding Regions(Institute Pasteur)
Phylogeny: PHYLIP, fastDNAml, Molphy (Institute Pasteur)

Service at EMBL (Germany)

Service at EBI (United Kingdom)

Service at Institute Pasteur  (France)

Service at ExPASy  (Switzerland)

Service at Laboratory of Theoretical Genetics  (Novosibirsk, Russia)

GeneBee service

Catalogues of online bioinformatic services:

ONLINE ANALYSIS TOOLS  (Dr. Andrew Kropinski, Kingston, Canada)
 Selected links with comments and instructions.
 
Catalogue of WWW services (based on EMBL site)
 
Multiple Alignment Resource Page