For speakers: please prepare your presentations in format 16:9.
July 16th | Thursday | |
| 9.00 | 10.00 | Registration and morning coffee | MSU, Biological Faculty |
| 10.00 | 10.10 | Opening | MSU, Biological Faculty, auditorium M1 |
| 10.10 | 11.30 | Bacterial genomics | M1 |
| 10.10 | 10.50 | Armen Mulkidjanian | Emergence of Membrane Bioenergetics from Ancient Systems of Na+/K+ Homeostasis |
| 10.50 | 11.10 | Igor Zhulin | A universal signaling mechanism in bacterial chemoreceptors |
| 11.10 | 11.30 | Dmitry Ravcheev | Genomic analysis of the respiration the microbiota of human intestine |
| 11.30 | 12.00 | Coffee break | |
| 12.00 | 13.20 | Transcriptomics | M1 |
| 12.00 | 12.40 | Peter Kharchenko | Classifying transcriptional and genetic heterogeneity in single-cell measurements |
| 12.40 | 13.00 | Maxim Artyomov | Network integration of parallel metabolomic-transcriptional data reveals novel metabolic modules regulating divergent macrophage polarization |
| 13.00 | 13.20 | Yuriy Orlov, Haihua Bai | Differential gene expression by RNA-seq data in brain structures of laboratory animals with aggressive and tolerant behavior |
| 13.20 | 15.00 | Lunch break | |
| 15.00 | 16.40 | Replication and chromatin | M1 |
| 15.00 | 15.40 | Maga Rowicka | Inferring direction of replication fork and mechanism of DNA damage using sequencing data |
| 15.40 | 16.00 | Vladimir Seplyarsky | APOBEC-induced mutations are strongly enriched on the lagging strand during replication in human cancers |
| 16.00 | 16.40 | Pre-party talk | M1 |
| 16.00 | 16.40 | David Sherman | Diversity and Domestication in Oenological Yeasts |
| 16.40 | 18.40 | | MSU, Biological Faculty, 1st floor hall |
| 18.40 | 19.00 | Buses depart for the Conference dinner | |
| 19.00 | | Dinner | |
July 17th | Friday | |
| 9.00 | 10.00 | Morning coffee | |
| 10.00 | 15.00 | Satellite event: OMICS–2015(Skolkovo Foundation and EMC) | MSU, Biological Faculty, auditorium M1 |
| 10.10 | | Yuri Nikolsky | Introduction |
| 10.15 | | Pakhomov or Meyer | Introduction |
| 10.10 | | | Introduction of Jury |
| 10.30 | 12.10 | Projects 1-10 | Presentation of projects |
| 12.10 | 12.40 | Coffee break | |
| 12.40 | | Projects 11-20 | Presentation of projects |
| 14.20 | 14.40 | Jury | Counting |
| 14.40 | 15.00 | | Announcement of winners, presentation of awards, conclusion |
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| 10.00 | 16.10 | Satellite event: MoBiLe 10Y symposium(with Leiden University Medical Center, NL) | MSU, Faculty of Bioengineering and Bioinformatics, auditorium 221 |
| 10.00 | 10.10 | A.E.Gorbalenya, B.A.Feniuk | Welcome |
| 10.10 | 10.40 | A.E.Gorbalenya | Fast evolution of a conserved residue of polyomaviruses defines a new mechanism of adaptation that operates by accelerated codon-constrained Val-Ala (COCO-VA) toggling within an intrinsically disordered protein region |
| 10.40 | 11.00 | I.Pulyakhina | The impact of biological ageing on RNA processing |
| 11.00 | 11.20 | S.Vinogradova | Probing-directed structured elements detection in RNA sequences |
| 11.20 | 11.50 | O.A. Mayboroda | Mobilis in MoBiLe: Students in a Dynamic Research Field |
| 11.50 | 12.10 | Coffee break | |
| 12.10 | 12.40 | P.A.C.'t Hoen | Novel insights in the regulation of mRNA transcription, processing and translation through integration of mRNA sequencing data |
| 12.40 | 13.00 | E.Khrameeva | Active chromatin regions are sufficient to define borders of topologically associated domains in D. melanogaster interphase chromosomes |
| 13.00 | 14.40 | Lunch break | |
| 14.40 | 15.10 | A.A.Mironov | Epigenomics, RNA etc. |
| 15.10 | 15.30 | I.Rusinov | A comparison of two methods for detection of exceptional words in genomic sequences of prokaryotes |
| 15.30 | 15.50 | P.Sinitcyn | Peptide search engine approach for detection of translated mutations |
| 15.50 | 16.10 | B.Nagaev | NPG-explorer: a new tool for nucleotide pangenome construction and analysis of closely related prokaryotic genomes |
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| 15.20 | 16.20 | Medical bioinformatics | MSU, Biological Faculty, auditorium M1 |
| 15.20 | 15.50 | Michael Tartakovsky | Building a Sustainable Bioinformatics Program Through Integrated Support |
| | | |
| 15.50 | 16.20 | Alexander Rosenthal | Network of the Country Tuberculosis Portals |
| 16.20 | 17.00 | Cancer–1 | M1 |
| 16.20 | 17.00 | Emmanuel Barillot | Deciphering gene interaction to explain tumor progression |
| 17.00 | 17.30 | Coffee break | |
| 17.30 | 19.10 | Cancer–2 | M1 |
| 17.30 | 17.50 | Jia Li | A model for scoring damaging mutations in the non-coding tumoral genome based on germline and tumor data |
| 17.50 | 18.10 | Ivan Kulakovskiy | Selection pressure on breast cancer somatic mutations revealed by bioinformatics sequence analysis |
| 18.10 | 18.30 | Mikhail Pyatnitskiy | Searching For Essential Cancer Proteins: Analysis Of Hypomutated Genes In Skin Melanoma |
| 18.30 | 19.10 | Andrei Zinovyev | Revealing mechanisms of cancer progression by pan-cancer deconvolution of tumoral transcriptomes |
July 18th | Saturday | | |
| 9.00 | 10.00 | Morning coffee | |
| 10.00 | 11.40 | Methods and algorithms | M1 |
| 10.00 | 10.20 | Tatiana Tatarinova | Analysis of variation in 3000 rice genomes project |
| 10.20 | 10.40 | Ancha Baranova | Distance-based profiling aids in evaluation of ageing-related phenomena |
| 10.40 | 11.00 | Max Alekseyev | Scaffold assembly based on genome rearrangement analysis |
| 11.00 | 11.20 | Ekaterina Myasnikova, Alexander Spirov | A method for model comparison based on the parameter sensitivity measures |
| 11.20 | 11.40 | Anna Igolkina | Method to predict the percentage of cell types in human blood |
| 11.40 | 12.10 | Coffee break | |
| 12.10 | 13.30 | Systems biology: Mammals and beyond | M1 |
| 12.10 | 12.50 | Alistar Forrest | Mammalian Systems biology |
| 12.50 | 13.30 | Vadim Gladyshev | Genomics of Lifespan Control |
| 13.30 | 15.00 | Lunch break | |
| 15.00 | 16.00 | Genomics of regulation | M1 |
| 15.00 | 15.20 | Arthur Dergilev, Ming Chen | Computer analysis of genome co-localization of transcription factor binding sites based on ChIP-seq data |
| 15.20 | 15.40 | Victoria Mironova | Search for simple and composite auxin responsive elements in Arabidopsis thaliana genome |
| 15.40 | 16.00 | Ivan Antonov | Antisense interactions of long noncoding RNAs in human cells |
| 16.00 | 16.40 | Viruses–1 | M1 |
| 16.00 | 16.40 | Manja Marz | Challenges in virus genomics |
| 16.40 | 17.10 | Coffee break | |
| 17.10 | 17.30 | Viruses–2 | M1 |
| 17.10 | 17.30 | Olga Kalinina | Sequence and structural analysis of related proteins in distant viral species |
| 17.30 | 19.10 | Proteins | M1 |
| 17.30 | 17.50 | Dmitry Suplatov | Bioinformatic analysis of diverse protein superfamilies to design improved enzymes |
| 17.50 | 18.10 | Boris Sobolev | Detecting the features of functional specificity in protein families based on the local sequence similarity |
| 18.10 | 18.30 | Oxana Galzitskaya | Determination of the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of their formation |
| 18.30 | 19.10 | Pavel Baranov | Assessing protein synthesis with ribosome profiling |
July 19th | Sunday | | |
| 9.00 | 10.00 | Morning coffee | |
| 10.00 | 11.40 | Genomics of anhydrobiosis | MSU, Biological Faculty, M1 |
| 10.00 | 10.20 | Wu Huiguang | Evolution of Camelids |
| 10.20 | 10.40 | Oleg Gusev | Anhydrobiosis in the sleeping chironomids: where are we now |
| 10.40 | 11.00 | Pavel Mazin | Expression regulation of desiccation-resistance genes in Polypedilum vanderplanki |
| 11.00 | 11.20 | Olga Kozlova | Molecular basics of different mechanisms of desiccation tolerance in Chironomidae midges |
| 11.20 | 11.40 | Elena Shagimardanova | Adapting to extremes: linking metabolome and genome of an anhydrobiotic insects |
| 11.40 | 12.10 | Coffee break | |
| 12.10 | 13.30 | Toolkits for anhydrobiosis research | M1 |
| 12.10 | 12.50 | Oleg Gusev | Single cell molecular toolkit for inducible resistance to complete desiccation |
| 12.50 | 13.30 | Richard Cornette | Genetic toolkit for investigation of anhydrobiosis: promoters and RNAi |
| 13.30 | 15.00 | Lunch break | |
| 15.00 | 16.00 | Genome structure | M1 |
| 15.00 | 15.20 | Igor Sharakhov | Genome mapping revealed scaffold misassemblies and elevated gene shuffling on the X chromosome in malaria mosquitoes |
| 15.20 | 15.40 | Valentina Boeva | Detection of short size mutations and copy number alterations in ultra-deep targeted sequencing data |
| 15.40 | 16.00 | Tatiana Popova | Genomic structural instability and homologous recombination deficiency in breast and ovarian cancers |
| 16.00 | 16.20 | Galina Kravatskaya | Genome Track Analyzer : New tool for genome-wide study of correlations between distributed genome features |
| 16.20 | 16.40 | Vladimir Babenko | Tale on the transposons on chromatin landscape |
| 16.40 | 17.10 | Coffee break | |
| 17.10 | 19.10 | Evolution | M1 |
| 17.10 | 17.30 | Vladimir Makarenkov | Assessing the impact of horizontal gene transfer on the evolution of prokaryotes |
| 17.30 | 17.50 | Konstantin Gunbin | Rare amino acid changes fixation drives divergence in Metazoa evolution |
| 17.50 | 18.10 | Margarita Meer | Evolution of TAG codon in Methanosarcina |
| 18.10 | 18.30 | Dinara Usmanova | A model of protein evolution within local fitness landscape changing with time |
| 18.30 | 19.10 | Fedor Kondrashov | Chartering the local fitness landscape of the green fluorescent protein |
| 19.10 | 19.20 | Closing | |
| 19.30 | | Farewell party | |
