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Astronomical Data Analysis Software and Systems VII
ASP Conference Series, Vol. 145, 1998
R. Albrecht, R. N. Hook and H. A. Bushouse, e
Ö Copyright 1998 Astronomical Society of the Pacific. All rights reserved.
ds.
ISDC Data Access Layer
D. Jennings, J. Borkowski, T. Contessi, T. Lock, R. Rohlfs and R.
Walter
INTEGRAL Science Data Centre, Chemin d'Ecogia 16, Versoix
CH­1290 Switzerland
Abstract. The ISDC Data Access Layer (DAL) is an ANSI C and
fortran90 compatible library under development in support of the ESA
INTEGRAL mission data analysis software. DALs primary purpose is to
isolate the analysis software from the specifics of the data formats while
at the same time providing new data abstraction and access capabilities.
DAL supports the creation and manipulation of hierarchical data sets
which may span multiple files and, in theory, multiple computer systems.
A number of Application Programming Interfaces (APIs) are supported
by DAL that allow software to view and access data at di#erent levels
of complexity. DAL also allows data sets to reside on disk, in conven­
tional memory or in shared memory in a way that is transparent to the
user/application.
1. Introduction
INTEGRAL 1 is an ESA Medium Class gamma­ray observatory mission sched­
uled for launch in 2001. It consists of four co­aligned instruments: two wide field
gamma­ray detectors (IBIS, SPI) an x­ray monitor (JEM­X) and an optical mon­
itor (OMC). The IBIS imager, SPI spectrometer and JEM­X x­ray monitor all
employ coded mask 2 detection technology which, amongst other complexities,
requires the spacecraft to constantly ``dither'' its pointing position in order to
accumulate the required number of coded sky images for analysis.
The dithering strategy creates some unique issues for data organization
and analysis. Each celestial observation will consist of a collection of pointings
(5 minute to 2 hour fixed position integrations); conversely, it is possible that
a given pointing may belong to several observations at once. A pointing is
itself a collection of science, instrument housekeeping and auxiliary data sets,
all of which may be grouped into various combinations for reasons of e#ciency
and conceptual elegance. Thus, the INTEGRAL data analysis system must
be capable of supporting distributed data sets composed of many individual
files and exhibiting one to many and many to many associations between the
individual data structure elements.
1 http://astro.estec.esa.nl/SA­general/Projects/Integral/integral.html
2 http://lheawww.gsfc.nasa.gov/docs/cai/coded.html
220

ISDC Data Access Layer 221
2. ISDC Data Model
The complicated relationships between observations, pointings, and pointing
data set components implies a natural hierarchy to the INTEGRAL data. This
has led to the current ISDC Data Model which generalizes the concepts of point­
ings and observations into Data Objects and Data Elements.
A Data Object is an association, or collection, of one or more Data Elements.
A Data Element may itself be Data Object (i.e., a sub­collection of data elements
with lower position in the hierarchy) or a terminal Base Element containing an
atomic data structure. There are three classes of terminal Base Elements that
define the atomic data structures: collections of data in tabular (row, column)
format known as TABLE elements, N dimensional data sets of homogeneous
data type known as ARRAY elements, and human readable and/or bulk data
(e.g., programs, text, GIF images, PostScript output) known as INFO elements.
In addition to the atomic data structures, there is a fourth class of Base Element
used to define compound (i.e., non­atomic) data structures known as GROUP
elements.
The recursive nature Data Elements allows for the construction of un­
bounded hierarchical associations of atomic data structures. At the opposite
extreme, a single atomic data structure may also be considered a Data Object
in its own right. Note that it is also possible for a Data Element to belong
to many di#erent Data Objects, thus allowing Data Objects to share a given
collection of data.
3. The DAL (Data Access Layer)
To implement the ISDC Data Model within the INTEGRAL analysis system,
ISDC is currently constructing the DAL, or Data Access Layer. The DAL allows
applications to create and manipulate data sets at the Data Object and Data
Element level of abstraction.
The DAL consists of four logical layers. The physical format I/O modules
CFITSIO 3 (for FITS) and SHMEMIO (for shared memory resident data) make
up the first layer. These modules handle all the details of the particular storage
formats available though DAL. Since the format specific details are isolated in
this manner it is possible to add other data format capability with no change to
the higher level software layers.
Above the physical format modules are the driver interface modules: FITS­
driver, MEMdriver and SHMEMdriver. All these drivers contain an uniform
set of interface functions that implement the respective data storage methods
(FITS resident data, memory resident data and shared memory resident data).
By using the driver level modules it is possible to provide the higher level DAL
layers with consistent interface calls regardless of the storage medium in use.
The next DAL layer, and the first used in application programming, is the
base element API level. Each of the four base elements supported by DAL
(ARRAY, TABLE, INFO and GROUP) has its own Application Programming
3 http://heasarc.gsfc.nasa.gov/docs/software/fitsio/fitsio.html

222 Jennings, Borkowski, Contessi, Lock, Rohlfs and Walter
FITSdriver
CFITSIO SHMEMIO
MEMdriver SHMEMdriver
Base Element APIs
1
2
3
High Level ISDC APIs
Object API
Analysis Applications
4
Level
TABLE ARRAY INFO
GROUP ELEMENT
Template Parser
Figure 1. The Data Access Layer four level API structure, with the
analysis applications residing above.
Interface that implements the element type. There is also a fifth API at this
level, the ELEMENT API, that allows applications to operate upon individual
data elements regardless of the base type.
The top level DAL layer is a collection of APIs that allow analysis applica­
tions to make e#cient use of the base element APIs. The Object API implements
hierarchical associations of data elements (i.e., the data model Data Objects),
and the high level ISDC APIs implement scientific data­specific collections of
data elements (e.g., spacecraft attitude and orbit, spectra, event lists).
4. DAL Data Objects: Data Format vs. Data Model
In order for DAL Data Objects, specifically the associations between the data
elements, to be persistent with time the physical data formats must support the
ISDC Data Model. For Data Objects stored on disk in FITS format the FITS
Hierarchical Grouping Convention 4 is utilized to achieve Data Format -- Data
Model conformity.
Each DAL Data Element is stored in a FITS file as a HDU (Header Data
Unit). Associations between Data Elements are stored in grouping tables as
defined by the Grouping Convention. DAL manages all the details involved in
creating and updating the grouping tables when a Data Object is written to
disk in FITS format, and it attempts to locate and read grouping tables when
opening an existing FITS­stored Data Object.
4 http://adfwww.gsfc.nasa.gov/other/convert/group.html

ISDC Data Access Layer 223
Group HDU
Group HDU
Group HDU
Group HDU
Image HDU
Image HDU
Atable HDU
Btable HDU
Btable HDU
File 2
File 1
File 4
File 3
ISDC Data Model (DAL) Regime
GROUP
GROUP
GROUP
ARRAY
ARRAY
INFO
TABLE
TABLE
GROUP
Data Format (FITS) Regime
Figure 2. Data format -- data model conformity. The lines connect­
ing the FITS HDUs (left) and DAL data elements (right) define the
hierarchical relationships between the data structures.
5. Conclusion
The DAL concept as presented here has several important implications that are
of general utility to astronomical software.
First of all, the data format specifics are hidden from the software appli­
cation, thus allowing the same API functions to be used for a variety of data
formats and access methods. Data residing in memory, for instance, may have a
di#erent storage paradigm than data residing in disk files. Also, many di#erent
file­based formats (FITS, HDF, CDF) may be used transparently by the analysis
applications.
Secondly, it is possible for Data Objects to span multiple data files in a
way that is inherent to the data structure itself. The relationship between data
structures persists even when the supporting archival infrastructure changes
(e.g., port to a new OS) or is eliminated entirely (i.e., as can happen at the
end of a space mission), thus providing for a self­contained data organization.
Data Objects may also in theory span multiple computer file systems in a way
that is transparent to the analysis applications. The implications for distributed
network data archives are significant.
Lastly, di#erent institutes may construct their own DAL­like data interface
packages to achieve their own specific goals, but still cooperate to promote com­
monality across the data formats/structures. The commonality may be added
or modified without changing higher level software.
The latest releases of DAL software and documentation may be obtained
on line from the INTEGRAL Science Data Centre 5 Web site. Questions or
comments regarding DAL should be directed to Don.Jennings@obs.unige.ch.
5 http://obswww.unige.ch/isdc/