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оригинального документа
: http://www.mrao.cam.ac.uk/~bn204/galevol/speca/build.html
Дата изменения: Mon Apr 4 13:47:52 2016 Дата индексирования: Sun Apr 10 09:41:32 2016 Кодировка: IBM-866 Поисковые слова: п п п п п п п п |
radiospec
package€ґAssuming dependencies, etc are all OK on your computer, the following script should be all you need to do. Note however that the radiospec is built in the “build” sub-directory of the directory you installed it to and is not installed – this is because you must modify at least some of the scripts to derive any new results with it.
# Destination directory, obviously adjust
export INSTALLDIR=/home/bnikolic/temp/rsbuildtest
# Install BNMin1
wget http://www.mrao.cam.ac.uk/~bn204/soft/bnmin1-1.11.tar.bz2
tar xjvf bnmin1-1.11.tar.bz2
cd bnmin1-1.11
LD_LIBRARY_PATH=$INSTALLDIR/lib PATH=$INSTALLDIR/bin:$PATH ./configure --prefix=$INSTALLDIR --with-boost=/home/bn204/d/p/boost_1_35_0bin
make && make install && cd ..
# Get PyHLP
wget http://www.mrao.cam.ac.uk/~bn204/soft/pyhlp-0.2.tar.gz
tar xvzf pyhlp-0.2.tar.gz
cd pyhlp-0.2
python setup.py install --home=$INSTALLDIR
cd ..
# Build radiospec
wget http://www.mrao.cam.ac.uk/~bn204/soft/radiospec-1.0.tar.gz
tar --strip-components=1 -xzvf radiospec-1.0.tar.gz
PATH=$INSTALLDIR/bin:$PATH scons PKG_CONFIG_PATH=$INSTALLDIR/lib/pkgconfig/
You should then start python as:
PYTHONPATH=$INSTALLDIR/bin:$INSTALLDIR/lib:$INSTALLDIR/lib/python python
Doesn’t work? Consult below for possible answers.
You will need a reasonably complete system with C++ development tools installed. Some of the dependencies at the time of writing are:
Here is a quick script that will install all of these to a location specified by you (but note this will involve a large amount of data download and will be processor intensive):
# Destination directory, obviously adjust
export INSTALLDIR=/home/bnikolic/temp/rsbuildtest
# First install GSL
wget http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/gsl/gsl-1.13.tar.gz
tar xzvf gsl-1.13.tar.gz
cd gsl-1.13
./configure --prefix=$INSTALLDIR
make && make install && cd ..
# Install swig.
wget "http://downloads.sourceforge.net/project/swig/swig/swig-1.3.40/swig-1.3.40.tar.gz?use_mirror=kent"
tar xzvf swig-1.3.40.tar.gz
cd swig-1.3.40
./configure --prefix=$INSTALLDIR
make && make install && cd ..
# Install SCons
wget "http://downloads.sourceforge.net/project/scons/scons/1.2.0/scons-1.2.0.tar.gz?use_mirror=switch"
tar xzvf scons-1.2.0.tar.gz
cd scons-1.2.0
python setup.py install --home=$INSTALLDIR
cd ..
# Install Boost
wget "http://downloads.sourceforge.net/project/boost/boost/1.41.0/boost_1_41_0.tar.bz2?use_mirror=sunet"
tar xjvf "boost_1_41_0.tar.bz2"
cd boost_1_41_0/tools/jam/src/
./build.sh
cp bin.*/bjam ../../../
cd ../../../
./bjam --prefix=$INSTALLDIR install
cd ..
# Install NumPy
(wget "http://downloads.sourceforge.net/project/numpy/NumPy/1.4.1/numpy-1.4.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fnumpy%2Ffiles%2FNumPy%2F1.4.1%2F&ts=1291202612&use_mirror=garr" &&
tar xzvf numpy-1.4.1.tar.gz &&
cd numpy-1.4.1 &&
python setup.py install --home=$INSTALLDIR &&
cd ..
)
# Install Scipy
(wget "http://downloads.sourceforge.net/project/scipy/scipy/0.8.0/scipy-0.8.0.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fscipy%2Ffiles%2F&ts=1291303353&use_mirror=kent" &&
tar xzvf scipy-0.8.0.tar.gz &&
cd scipy-0.8.0 &&
PYTHONPATH=${INSTALLDIR}/lib64/python:$PYTHONPATH python setup.py install --home=$INSTALLDIR)
#install hdf5
(wget http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.5-patch1.tar.gz &&
tar xzvf hdf5-1.8.5-patch1.tar.gz &&
cd hdf5-1.8.5-patch1 &&
./configure --prefix=$INSTALLDIR &&
make install &&
cd ..)
#install Cython
(wget http://www.cython.org/release/Cython-0.13.tar.gz &&
tar xzvf Cython-0.13.tar.gz &&
cd Cython-0.13 &&
PYTHONPATH=${INSTALLDIR}/lib64/python:$PYTHONPATH python setup.py install --home=$INSTALLDIR &&
cd ..)
#install pytables
( wget http://www.pytables.org/download/stable/tables-2.2.1.tar.gz&&
tar xzvf tables-2.2.1.tar.gz &&
cd tables-2.2.1 &&
PYTHONPATH=${INSTALLDIR}/lib64/python:$PYTHONPATH python setup.py install --home=$INSTALLDIR --hdf5=$INSTALLDIR &&
cd ..)
#
( wget http://numexpr.googlecode.com/files/numexpr-1.4.1.tar.gz &&
tar xzvf numexpr-1.4.1.tar.gz &&
cd numexpr-1.4.1 &&
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${INSTALLDIR}/lib PYTHONPATH=${INSTALLDIR}/lib64/python:$PYTHONPATH python setup.py install --home=$INSTALLDIR &&
cd ..)
# Building bnmin1 -- See also other scipts
LD_LIBRARY_PATH=${INSTALLDIR}/lib:$LD_LIBRARY_PATH \
PATH=${INSTALLDIR}/bin:$PATH \
PKG_CONFIG_PATH=${INSTALLDIR}/lib/pkgconfig \
./configure --prefix=${INSTALLDIR} --with-boost=${INSTALLDIR}
# PyX
(wget "http://downloads.sourceforge.net/project/pyx/pyx/0.10/PyX-0.10.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fpyx%2Ffiles%2Fpyx%2F&ts=1291302980&use_mirror=kent"
tar xzvf PyX-0.10.tar.gz
cd PyX-0.10
PYTHONPATH=${INSTALLDIR}/lib64/python:$PYTHONPATH python setup.py install --home=$INSTALLDIR &&
Important note regarding boost: If you installed boost using this script you must specify its location to BNMin1 by changing the following lines in the simple installation script from:
cd bnmin1-1.9
LD_LIBRARY_PATH=$INSTALLDIR/lib PATH=$INSTALLDIR/bin:$PATH ./configure --prefix=$INSTALLDIR
to the following:
cd bnmin1-1.9
LD_LIBRARY_PATH=$INSTALLDIR/lib PATH=$INSTALLDIR/bin:$PATH ./configure --prefix=$INSTALLDIR --with-boost=$INSTALLDIR
This is because the boost installation is not detected by a program in path but rather using a more complicated algorithm.
If you have problem running the build script with an output similar to:
scons: Reading SConscript files ...
NameError: name 'Variables' is not defined:
File "/tmp/SConstruct", line 8:
opts=Variables("")
Exit 2
then the most likely reason is that your version of SCons is too old. You need to use version 1.2 or newer.