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Дата изменения: Fri Jan 9 20:41:19 2009
Дата индексирования: Tue Oct 2 07:04:10 2012
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Поисковые слова: arp220
Mikhail ROYTBERG
Researcher at the Laboratory since October 2008
BORN: 27/12/1952, Kiev, Ukraine
Address: 142290, Russia, Pushchino, Moscow Region, District "D", building 5, apt. 80
INSTITUTE of MATHEMATICAL PROBLEMS of BIOLOGY, RUSSIAN ACADEMY of SCIENCES.
1992 - 2006 "Computational Molecular Biology" Research Group, Group Leader
2007 - Present Lab of Applied Mathematics, Head of the Lab
VISITING POSITIONS
Laboratory of Research in Informatics and Algorithms (LORIA), Nancy, France
2003, November-December; 2004, May- July;
Laboratory of Fundamental Research in Informatics (Lille, France), INRIA (Roquencourt, France)
2005, September-November; 2006, November - December; 2007, November - December
National Center of Biotechnology Information, Bethesda, MD
2000, October-December; 2004, January-March
Rutgers University, Math Dept, New Brunswick, NJ
1998, October-December; 1999, May-June and November-December
University of Southern California, Dept. of Mathematics, Los Angeles, CA
1996, March-May and October-November; 1997, March-May
Georgia Inst. of Technology, School of Biology, Atlanta, GA
1994, November-December; 2005, June-July
CONSULTING
2001 - 2003, Algodign LLC, Head of Bioinformatics Group
TEACHING EXPERIENCE
1997 - Present: Pushchino State University
2000 - 2001: Moscow Institute of Physics and Technology ("Phystech")
2001, 2004-2007: Moscow State University
RESEARCH INTERESTS
Bioinformatics (algorithms in bioinformatics, in particular,
sequence comparison, RNA structure). Software design. Education (Math, Science).
GRANTS and AWARDS
Team leader in grants from RFBR, Russia (1994-2008),
ECO-NET, France (2005-2006), NWO, The Netherlands (2001-2004),
INTAS (2000-2002, 2006-2007) Merck (2000-2001) A.A.Baev Award (1997)
SOME PUBLICATIONS:
Boeva V, Clement J, Regnier M, Roytberg MA, Makeev VJ. Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules. Algorithms Mol Biol. 2007 Oct 10;2(1)
Asthana S., Roytberg M., Stamatoyannopoulos J., Sunyaev S, Analysis of sequence conservation at nucleotide resolution, PLoS Comput Biol. 2007 Dec;3(12):e254.
Backofen R, Chen S, Hermelin D, Landau GM, Roytberg MA, Weimann O, Zhang K. Locality and gaps in RNA comparison, J Comput Biol. 2007 Oct;14(8):1074-87.
Ogurtsov, A.Yu, Shabalina, S.A., Kondrashov, A.S., Roytberg M.A. Analysis of internal loops within the RNA secondary structure in almost quadratic time. Bioinformatics, 2006, Vol. 22, No. 11, 1317-1324
Kucherov, G., Noé, L. Roytberg, M. A unifying framework for seed sensitivity and its application to subset seeds. Journal of Bioinformatics and Computational Biology, 2006, Vol. 4, No. 2, 553-569
Kucherov, G., Noé, L. Roytberg, M. Multi-seed lossless filtration. IEEE/ACM Transactions on Computational Biology and Bioinformatics, January-March 2005, Vol. 2, No. 1, 51-61.
Sunyaev, G.A. Bogopolsky, N.V. Oleynikova, P.K. Vlasov, A.V. Finkelstein, M.A. Roytberg. From Analysis of Protein Structural Alignments Toward a Novel Approach to Align Protein Sequences. PROTEINS: Structure, Function, and Bioinformatics, 2004, 54(3), 569-582
Roytberg, M.A Ogurtsov, A.Y., Shabalina, S.A., Kondrashov A.S. A hierarchical approach to aligning collinear regions of genomes. Bioinformatics 2002 18: 1673-1680
Roytberg M.A., Semionenkov M.N., Tabolina O.Yu. Pareto-optimal Alignment of Biological Sequences. Biophysics, Vol. 44, No. 4, 1999, pp. 565-577. Translated from Biofizika, Vol. 44, No. 4, 1999, pp. 581-594.
Gelfand M.S., Podolsky L.I., Astakhova T.V., Roytberg M.A. Recognition of genes in human DNA sequences. J Comput Biol. 1996 Summer;3(2):223-34.
Finkelstein A.V., Roytberg M.A. Computation of biopolymers: a general approach to different problems. Biosystems. 1993;30(1-3):1-19.