Analyzer (ImageJ API)

Документ взят из кэша поисковой машины. Адрес оригинального документа : http://www.astro.louisville.edu/software/astroimagej/imagej/api/ij/plugin/filter/Analyzer.html
Дата изменения: Thu Dec 2 23:03:10 2010
Дата индексирования: Mon Oct 1 23:17:15 2012
Кодировка:
Поисковые слова: mdi

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ij.plugin.filter
Class Analyzer

java.lang.Object
  ij.plugin.filter.Analyzer

All Implemented Interfaces:: Measurements, PlugInFilter

public class Analyzer
extends java.lang.Object
implements PlugInFilter, Measurements
extends java.lang.Object
implements PlugInFilter, Measurements

This plugin implements ImageJ's Analyze/Measure and Analyze/Set Measurements commands.

Field Summary

static java.awt.Color darkBlue


static int markWidth


static int precision


Fields inherited from interface ij.plugin.filter.PlugInFilter

CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING

Fields inherited from interface ij.measure.Measurements

AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, PERIMETER, RECT, SCIENTIFIC_NOTATION, SHAPE_DESCRIPTORS, SKEWNESS, SLICE, STACK_POSITION, STD_DEV

Constructor Summary

Analyzer()


Analyzer(ImagePlus imp)
          Constructs a new Analyzer using the specified ImagePlus object and the current measurement options and default results table.

Analyzer(ImagePlus imp, int measurements, ResultsTable rt)
          Construct a new Analyzer using an ImagePlus object and private measurement options and results table.

Method Summary

void displayResults()
          Writes the last row in the system results table to the Results window.

static int getCounter()
          Returns the current measurement count.

static int getMeasurements()


static int getPrecision()
          Returns the number of digits displayed to the right of decimal point.

static ImagePlus getRedirectImage(ImagePlus currentImage)
          Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as currentImage.

static ResultsTable getResultsTable()
          Returns the default results table.

static float[] getUMeans()
          Returns an array containing the first 20 uncalibrated means.

static boolean isRedirectImage()
          Returns true if an image is selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog box.

void measure()
          Measures the image or selection and adds the results to the default results table.

java.lang.String n(double n)
          Converts a number to a formatted string with a tab at the end.

static boolean resetCounter()
          Sets the measurement counter to zero.

void run(ImageProcessor ip)
          Filters use this method to process the image.

static void savePreferences(java.util.Properties prefs)
          Called once when ImageJ quits.

void saveResults(ImageStatistics stats, Roi roi)
          Saves the measurements specified in the "Set Measurements" dialog, or by calling setMeasurements(), in the default results table.

static void setDefaultHeadings()
          Sets the default headings ("Area", "Mean", etc.).

static void setMeasurement(int option, boolean state)
          Sets the specified system-wide measurement option.

static void setMeasurements(int measurements)
          Sets the system-wide measurement options.

static void setOption(java.lang.String option, boolean b)


static void setPrecision(int decimalPlaces)
          Sets the number of digits displayed to the right of decimal point.

static void setRedirectImage(ImagePlus imp)
          Set the "Redirect To" image.

static void setResultsTable(ResultsTable rt)


static void setUnsavedMeasurements(boolean b)


int setup(java.lang.String arg, ImagePlus imp)
          This method is called once when the filter is loaded.

void summarize()


void updateHeadings()
          Redisplays the results table.

static double updateY(double y, int imageHeight)
          Returns an updated Y coordinate based on the current "Invert Y Coordinates" flag.

static int updateY(int y, int imageHeight)
          Returns an updated Y coordinate based on the current "Invert Y Coordinates" flag.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Summary
`static java.awt.Color`	`darkBlue`
`static int`	`markWidth`
`static int`	`precision`

Fields inherited from interface ij.plugin.filter.PlugInFilter
`CONVERT_TO_FLOAT, DOES_16, DOES_32, DOES_8C, DOES_8G, DOES_ALL, DOES_RGB, DOES_STACKS, DONE, FINAL_PROCESSING, KEEP_THRESHOLD, NO_CHANGES, NO_IMAGE_REQUIRED, NO_UNDO, PARALLELIZE_STACKS, ROI_REQUIRED, SNAPSHOT, STACK_REQUIRED, SUPPORTS_MASKING`

Fields inherited from interface ij.measure.Measurements
`AREA, AREA_FRACTION, CENTER_OF_MASS, CENTROID, CIRCULARITY, ELLIPSE, FERET, INTEGRATED_DENSITY, INVERT_Y, KURTOSIS, LABELS, LIMIT, MAX_STANDARDS, MEAN, MEDIAN, MIN_MAX, MODE, PERIMETER, RECT, SCIENTIFIC_NOTATION, SHAPE_DESCRIPTORS, SKEWNESS, SLICE, STACK_POSITION, STD_DEV`

Constructor Summary
`Analyzer()`
`Analyzer(ImagePlus imp)` Constructs a new Analyzer using the specified ImagePlus object and the current measurement options and default results table.
`Analyzer(ImagePlus imp, int measurements, ResultsTable rt)` Construct a new Analyzer using an ImagePlus object and private measurement options and results table.

Method Summary
`void`	`displayResults()` Writes the last row in the system results table to the Results window.
`static int`	`getCounter()` Returns the current measurement count.
`static int`	`getMeasurements()`
`static int`	`getPrecision()` Returns the number of digits displayed to the right of decimal point.
`static ImagePlus`	`getRedirectImage(ImagePlus currentImage)` Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as `currentImage`.
`static ResultsTable`	`getResultsTable()` Returns the default results table.
`static float[]`	`getUMeans()` Returns an array containing the first 20 uncalibrated means.
`static boolean`	`isRedirectImage()` Returns `true` if an image is selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog box.
`void`	`measure()` Measures the image or selection and adds the results to the default results table.
`java.lang.String`	`n(double n)` Converts a number to a formatted string with a tab at the end.
`static boolean`	`resetCounter()` Sets the measurement counter to zero.
`void`	`run(ImageProcessor ip)` Filters use this method to process the image.
`static void`	`savePreferences(java.util.Properties prefs)` Called once when ImageJ quits.
`void`	`saveResults(ImageStatistics stats, Roi roi)` Saves the measurements specified in the "Set Measurements" dialog, or by calling setMeasurements(), in the default results table.
`static void`	`setDefaultHeadings()` Sets the default headings ("Area", "Mean", etc.).
`static void`	`setMeasurement(int option, boolean state)` Sets the specified system-wide measurement option.
`static void`	`setMeasurements(int measurements)` Sets the system-wide measurement options.
`static void`	`setOption(java.lang.String option, boolean b)`
`static void`	`setPrecision(int decimalPlaces)` Sets the number of digits displayed to the right of decimal point.
`static void`	`setRedirectImage(ImagePlus imp)` Set the "Redirect To" image.
`static void`	`setResultsTable(ResultsTable rt)`
`static void`	`setUnsavedMeasurements(boolean b)`
`int`	`setup(java.lang.String arg, ImagePlus imp)` This method is called once when the filter is loaded.
`void`	`summarize()`
`void`	`updateHeadings()` Redisplays the results table.
`static double`	`updateY(double y, int imageHeight)` Returns an updated Y coordinate based on the current "Invert Y Coordinates" flag.
`static int`	`updateY(int y, int imageHeight)` Returns an updated Y coordinate based on the current "Invert Y Coordinates" flag.

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Field Detail

darkBlue

public static java.awt.Color darkBlue

markWidth

public static int markWidth

precision

public static int precision

Constructor Detail

Analyzer

public Analyzer()

Analyzer

public Analyzer(ImagePlus imp)

Constructs a new Analyzer using the specified ImagePlus object and the current measurement options and default results table.

Analyzer

public Analyzer(ImagePlus imp,
                int measurements,
                ResultsTable rt)

Construct a new Analyzer using an ImagePlus object and private measurement options and results table.

Method Detail

setup

public int setup(java.lang.String arg,
                 ImagePlus imp)

Description copied from interface: PlugInFilter

This method is called once when the filter is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt or in the plugins.config file of a jar archive containing the plugin. 'imp' is the currently active image. This method should return a flag word that specifies the filters capabilities.

For Plugin-filters specifying the FINAL_PROCESSING flag, the setup method will be called again, this time with arg = "final" after all other processing is done.

Specified by:: setup in interface PlugInFilter

run

public void run(ImageProcessor ip)

Description copied from interface: PlugInFilter

Filters use this method to process the image. If the SUPPORTS_STACKS flag was set, it is called for each slice in a stack. With CONVERT_TO_FLOAT, the filter is called with the image data converted to a FloatProcessor (3 times per image for RGB images). ImageJ will lock the image before calling this method and unlock it when the filter is finished. For PlugInFilters specifying the NO_IMAGE_REQUIRED flag and not the DONE flag, run(ip) is called once with the argument null.

Specified by:: run in interface PlugInFilter

measure

public void measure()

Measures the image or selection and adds the results to the default results table.

isRedirectImage

public static boolean isRedirectImage()

Returns true if an image is selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog box.

setRedirectImage

public static void setRedirectImage(ImagePlus imp)

Set the "Redirect To" image. Pass 'null' as the argument to disable redirected sampling.

getRedirectImage

public static ImagePlus getRedirectImage(ImagePlus currentImage)

Returns the image selected in the "Redirect To:" popup menu of the Analyze/Set Measurements dialog or null if "None" is selected, the image was not found or the image is not the same size as currentImage.

saveResults

public void saveResults(ImageStatistics stats,
                        Roi roi)

Saves the measurements specified in the "Set Measurements" dialog, or by calling setMeasurements(), in the default results table.

displayResults

public void displayResults()

Writes the last row in the system results table to the Results window.

updateHeadings

public void updateHeadings()

Redisplays the results table.

n

public java.lang.String n(double n)

Converts a number to a formatted string with a tab at the end.

summarize

public void summarize()

getCounter

public static int getCounter()

Returns the current measurement count.

resetCounter

public static boolean resetCounter()

Sets the measurement counter to zero. Displays a dialog that allows the user to save any existing measurements. Returns false if the user cancels the dialog.

setUnsavedMeasurements

public static void setUnsavedMeasurements(boolean b)

getMeasurements

public static int getMeasurements()

setMeasurements

public static void setMeasurements(int measurements)

Sets the system-wide measurement options.

setMeasurement

public static void setMeasurement(int option,
                                  boolean state)

Sets the specified system-wide measurement option.

savePreferences

public static void savePreferences(java.util.Properties prefs)

Called once when ImageJ quits.

getUMeans

public static float[] getUMeans()

Returns an array containing the first 20 uncalibrated means.

getResultsTable

public static ResultsTable getResultsTable()

Returns the default results table. This table should only be displayed in a the "Results" window.

getPrecision

public static int getPrecision()

Returns the number of digits displayed to the right of decimal point.

setPrecision

public static void setPrecision(int decimalPlaces)

Sets the number of digits displayed to the right of decimal point.

updateY

public static int updateY(int y,
                          int imageHeight)

Returns an updated Y coordinate based on the current "Invert Y Coordinates" flag.

updateY

public static double updateY(double y,
                             int imageHeight)

Returns an updated Y coordinate based on the current "Invert Y Coordinates" flag.

setDefaultHeadings

public static void setDefaultHeadings()

Sets the default headings ("Area", "Mean", etc.).

setOption

public static void setOption(java.lang.String option,
                             boolean b)

setResultsTable

public static void setResultsTable(ResultsTable rt)

Overview

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Class

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PREV CLASS NEXT CLASS

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SUMMARY: NESTED | FIELD | CONSTR | METHOD

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ij.plugin.filter Class Analyzer

darkBlue

markWidth

precision

Analyzer

Analyzer

Analyzer

setup

run

measure

isRedirectImage

setRedirectImage

getRedirectImage

saveResults

displayResults

updateHeadings

n

summarize

getCounter

resetCounter

setUnsavedMeasurements

getMeasurements

setMeasurements

setMeasurement

savePreferences

getUMeans

getResultsTable

getPrecision

setPrecision

updateY

updateY

setDefaultHeadings

setOption

setResultsTable

ij.plugin.filter
Class Analyzer