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fitshdr(1)
NAME
fitshdr - FITS-file headers manipulation tool
SYNOPSIS
fitshdr
[options] [FITSfile_name]
fitshdr
[options] -
fitshdr
[options] --edit FITSfile_name
fitshdr
[options] -H HeaderFile_name -F FITSfile_name
DESCRIPTION
Fitshdr
utility allows to display or modify FITS headers
(FITS MultiExtentionsFiles included).
In 'dump' mode (see below): allows to see/dump/display FITS-headers
information. In 'edit' mode: permits to modify existent FITS-file headers.
ATTENTION:
"existent FITS-file headers" means, that all modifications will be done
directly
in the FITS-file, which was specified for editing!
You can't, for example, expand existent header (You can't change size of
header). And, no backups!
More simple,
fitshdr
is some sort of binary editor. If You are looking for more "traditional"
editors, check
fitshdr_edit
and
fitshdr_expand
man pages.
OPTIONS
- -F FITSFILE, --file=FITSFILE, --fits-file=FITSFILE
-
FITSFILE
- FITS-file name to browse or modify, mandatory in 'edit'
mode (see
--edit
and
-H
options).
In 'dump' mode, if FITS-file name is missed, stdin is used instead.
- --edit
-
'Edit' mode. If You want to modify headers of
FITSFILE
using new FITS-header
lines from
HEADER
file (or from stdin), You have to use this option (You can skip
this option, if
-H
or
--header
option is used).
Obviously, in this case FITS file name
FITSFILE
has to be defined (or by
--file, --fits-file, -F
options, or as last (free) argument of
fitshdr
utility). If
--edit
options is defined, but
-H
or
--header
is not, in this case stdin is used to read new header lines.
- -H HEADER, --header=HEADER
-
HEADER
- Header file name. This file contains header's lines, which will be
included in FITS-header. This option activates 'edit' mode automaticaly
(means: it is not necessary to specify --edit option in this case).
See
--edit
option.
- -h, --help
-
Output a brief help message.
- -V, --version
-
Print the version number of
fitshdr
to standard error and exit.
- -v, --verbose
-
Produces verbose output. Multiple -v options increase the verbosity.
- -q, --silent
-
Produces less verbose output. Multiple -q options decrease the verbosity.
- -n, --test
-
In 'edit' mode: do everything... but don't write nothing. Useful, to check
new header lines before writing them to FITS-file.
WARNING:
In some cases,
--test
option produces internal checks' result different
from "normal" one (without
--test
).
In 'dump' mode: ignored.
- -p, --pedantic
-
More internal checks. Multiple
-p
options increase the number of internal checks.
- -f, --force
-
Less internal checks. Multiple
-f
options decrease the number of internal checks.
- --empty-lines
-
Empty header lines are displayed (in 'dump' mode only).
- --no-empty-lines
-
Empty header lines are not displayed (in 'dump' mode only).
- --line-offsets
-
In 'edit' mode: the usage of lines' offsets in input header-file is mandatory.
In 'dump' mode: file offset will be displayed for each header line.
- --no-line-offsets
-
In 'edit' mode: the usage of lines' offsets in header file is optional
(means: You can use offsets, but this is not obligatory).
In 'dump' mode: file offset will not be displayed for each header line.
- --header-offsets
-
In 'dump' mode: headers offsets informations will be added to the output.
In 'edit' mode: ignored.
- --no-header-offsets
-
In 'dump' mode: headers offsets informations will not be included in output.
In 'edit' mode: ignored.
- --block-offsets
-
In 'dump' mode: FITS-blocks' offsets informations will be added to the output.
In 'edit' mode: ignored.
- --no-block-offsets
-
In 'dump' mode: FITS-blocks' offsets informations will not be included in output.
In 'edit' mode: ignored.
- --data-offsets
-
In 'dump' mode: FITS-data blocks' offsets informations will be added to the output.
In 'edit' mode: ignored.
- --no-data-offsets
-
In 'dump' mode: FITS-data blocks' offsets informations will not be included in output.
In 'edit' mode: ignored.
- --reformat-cards
-
In 'edit' mode: re-format input FITS-header lines before writing. In this
case You can use, for example, as input header lines in "free" format (You
can skip multiple spaces, etc.).
WARNING:
HIERARCH
"non-standard" keywords will not be re-formated!
In 'dump' mode: ignored.
- --no-reformat-cards
-
In 'edit' mode: don't re-format input FITS-header lines (means: input
lines were formated already).
In 'dump' mode: ignored.
- --modify-principal-keywords
-
In 'edit' mode: allows to modify ``principal'' FITS-keywords, such as
SIMPLE, BITPIX, NAXIS, ...
DANGEROUS!
Be careful: wrong ``principal'' keywords values can destroy Your data!
In 'dump' mode: ignored.
- --discard-old-headers
-
In 'edit' mode: really
DANGEROUS!
This option allows to change completely structure of FITS-file... and as
result: You can damage important data. Don't use, if You are not the author of
fitshdr
utility.
In 'dump' mode: it makes no sense to use... but safe :)
INPUT AND OUTPUT
In 'dump' mode
fitshdr
utility prints FITS-file's headers information line by line in
"human-readable" format (see examples).
In 'edit' mode input header file has absolutely the same format, as output
of
fitshdr
utility in 'dump' mode. So
NNNN:HEADER_LINE
where NNNN - file offset for this header line, HEADER_LINE - header line
string. Offset specification could be omitted (skipped). As offset positive
integer (NNNN%80 == 0) is expected. Special (relative) offsets
+NNNN and -NNNN are supported. Two input header's lines
+0:HEADER_LINE
and
HEADER_LINE
are equivalent. The only difference... 1st line is permitted if
--line-offsets
is used, but not the 2nd one!
NOTE:
By default
fitshdr
utility
expects sorted by offsets input header file. In this case negative relative
offsets are not permitted. You have to specify
-f
options ( probably,
-ff
or, even,
-fff
) to be able use negative relative offsets (or unsorted input header file).
``END'' FITS-header card.
The ``END'' FITS-header card has special meaning.
The processing of the ``normal'' FITS-card does the following:
- 80 bites will be written to the file (started from NNNN
offset).
- The file pointer will be pointed to the next FITS-card.
In contract, the processing of the input
FITS-card ``NNNN:END'' does:
- 80 bites will be written to the file (started from NNNN
offset).
- The tail of current FITS-block will be filled by spaces.
- The file pointer will be pointed to the beginning of the
next FITS-header, if exists.
ATTENTION:
FITS-header line (card) "END" (without offset) does last action only!
Means: the only file offset will be changed after processing input
FITS-header line "END" without offset! If You want to avoid such behavior,
use "+0:END" header line instead.
Comment lines.
Input header lines with ";" symbol in first position are ignored by
fitshdr
in 'edit' mode.
EXAMPLES
Simplest example. To display FITS-headers information:
fitshdr file.fits
where file.fits - existent FITS-file name. As the result, You'll see
something like:
;;; 0: HEADER No.0
;;; 0: BLOCK No.0
SIMPLE = T
BITPIX = 32
NAXIS = 0
AUTHOR = 'Name of author' / comment here
CRDELT1 = 10.0
CRDELT2 = 21.0 / this is an example
HISTORY header No.0: 1st history line 123456789012345678901234567
COMMENT Sat Sep 25 21:17:34 CEST 2004 / by fitshdr_edit
;;; 2880: BLOCK No.1
. . .
Next step. We want to add lines offsets for each header line and suppress
blocks' offsets output. In this case:
fitshdr --line-offsets --no-block-offsets file.fits
In this case we'll have:
;;; 0: HEADER No.0
0:SIMPLE = T
80:BITPIX = 32
160:NAXIS = 0
400:AUTHOR = 'Name of author' / comment here
480:CRDELT1 = 10.0
560:CRDELT2 = 21.0 / this is example
720:HISTORY header No.0: 1st history line 123456789012345678901234567
880:COMMENT Sat Sep 25 21:17:34 CEST 2004 / by fitshdr_edit
. . .
Another useful example. How to display headers' information in case if
FITS-file was gzip-ed:
gunzip < file.fits.gz | fitshdr
Now, about editing... Again, simplest example. We want to change header
line with offset 720. In this case:
echo "720:CRPIX1 = 10. / comment" | fitshdr --edit file.fits
The line (see previous example)
HISTORY header No.0: 1st history line 123456789012345678901234567
was substituted by
CRPIX1 = 10.0 / comment
As You can see, input line was formated before writing.
Now more complex example. We want to edit interactively FITS-headers.
fitshdr --line-offsets file.fits > tmp.hdr
emacs tmp.hdr
fitshdr --line-offsets --header=tmp.hdr --edit file.fits
First, header was written in file tmp.hdr. After this temporary file was
changed in emacs editor. And after this new header was written back to
FITS-file.
NOTE:
This is just an example. Better for such purposes use
fitshdr_edit
script.
More useful/"realistic" example. We want (by some reason) change in headers
name of keyword.
fitshdr --empty-lines file.fits | \
sed "s/^FILTER /FILTER1/" | \
fitshdr --edit file.fits
In this example, the FILTER keyword was substituted by FILTER1.
Keyword's value was not changed (only name of keyword was changed).
DIAGNOSTICS
On success, zero is returned and non-zero, if an error occurred.
SEE ALSO
fitshdr_edit(1), fitshdr_expand(1)
BUGS
Email bug reports to
fitshdr@sai.msu.ru.
Be sure to include the word ``fitshdr'' somewhere in the
``Subject:'' field.
- NAME
-
- SYNOPSIS
-
- DESCRIPTION
-
- OPTIONS
-
- INPUT AND OUTPUT
-
- EXAMPLES
-
- DIAGNOSTICS
-
- SEE ALSO
-
- BUGS
-
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Time: 13:42:21 GMT, December 10, 2010