Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/4ukv.pdb1.pdb.hmm.txt Дата изменения: Thu Nov 6 17:20:02 2014 Дата индексирования: Mon Apr 11 13:25:10 2016 Кодировка: Поисковые слова: m 106

# pfam_scan.pl, run at Thu Nov 6 17:19:53 2014
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/4ukv.pdb1.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

4ukv_D 14 88 10 89 PF00181.18 Ribosomal_L2 Domain 5 76 77 49.6 2.7e-13 1 CL0021
#HMM kGritvrhrggghkrkyrlidfkrkkenikgkVvkieydpnRsapialvkyedgekr.....yilapeglkvGdtiv
#MATCH +++++r r g k r +d+++++++i+g+V++i +d++R ap+a+v++ d +k+ ++a eg+++G++i+
#PP 4899*******..9***************************************888779999*************98
#SEQ IFTSHTRLRQG--AAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYrlreeIFIANEGVHTGQFIY
4ukv_D 96 227 95 230 PF03947.13 Ribosomal_L2_C Domain 2 127 130 139.5 5e-41 1 CL0107
#HMM kiGnalpLkniplGtvvhnielkpgkggklarsaGtvaqilakee..kyvlvkLpSgevklvskecrAtiGevsneekknkklgkAgrsrwlgk.....rptvRGvamnpvDhPhGGGegktsigrkspvspw
#MATCH ++Gn+lpL ++p+Gt+v+n+e kpg++g lar++G+++ i+ ++ +++ v+LpSg +k++s+++r++iG++++ ++ +k+l kAgr++++++ +p++RGvamnpvDhPhGGG+ +++ig++s++s+
#PP 78****************************************986779********************************************99999**********************.******9998875
#SEQ NVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPdeNKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRlkrnsWPKTRGVAMNPVDHPHGGGN-HQHIGKASTISRG
#CS STT-BEESTTSSTT-EEESB-SSSSS---SS-SSTB-BEEEEEES..SEEEEEETTTEEEEEETTSEEEES-BSSSSTTS---SSTTTTTTTSS.....SS---GTCS-TTT-TT--SSSS--SS-.--SSSS
4ukv_E 49 338 49 338 PF00297.17 Ribosomal_L3 Family 1 263 263 410.6 2.4e-123 1 No_clan
#HMM KaGMthivreldkpgsktekkeeveavTvietppmvvvqvktyeetprGlrslktvwaehlseevkrrlykn................edgkkaievelekikkkasvkrvlahtqkrklklkqkkahlaeirvnggtiaekvdfareelevgktvkvedvFeegelvdvigvtkGkGfeGvvkRwgvkklprkhgrgllRkvgsiGawhparvlktvkraGqkGyekrtelnkkivridk..............ekeitPmGGfvhyGevendlllvkGsvpGpkkrlvtlr
#MATCH KaGMt+ivr+ld+pgsk++k+e+veavTv++tpp+vvv+v++y+etprGlrsl+tvwaehls+evkrr+ykn +++ ++ie+el++ikk+asv+rvl htq+rk++l+qkkahlaei++ngg+i+ekvd+are++e ktv+v++vFe++e++d+i+vtkG+GfeGv++Rwg+kklprk++rg lRkv++iGawhpa+v+++v+raGq+Gy++rt++n+ki+r++k +k+itPmGGfvhyGe++nd+++vkG++pG++kr+vtlr
#PP 9***************************************************************************************9999***********************************************************..*********************************************.********************************************************************************************98
#SEQ KAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYKNwykskkkaftkysakyAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFE--KTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHRG-LRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKgddeangatsfdrtKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLR
#CS CEEEEEEEEE--STTSTTTTSEEEEEEEEEE---EEEECEEEEEECTTEEEEEEEEESS--SCCCCCTCSST................CCCCHHHCCCCCHHCTSSSS-EEEEEE-CCCSTSS-SS-EEEEEEB-SSSHHHHHHHHHCCCC..S-B-TTTT--TT-EEEEEEE--EECCE-HHHHC------TTTTTT.TTS-S-SS-SSSSS--TTS---EEECS-EEEECCEEECCEEE..............S-SSSSTT-CTTTB---SEEEEECS--SSSTTTCEEEE
4ukv_F 20 259 19 260 PF00573.17 Ribosomal_L4 Family 2 191 192 158.2 1.5e-46 1 No_clan
#HMM elspevfdapirrdlihravvaylankrqgtastk.trsevsgsgrkpwpQKGtGrARvgsir............spilrgGgvahgpkperdystklnkKvrrlAlrsaLsakaregkllvvd....nleple............epktkeavellkklgl..........................ksksvLivvsekdenlvlasrnlpgvevisveelnvydllkgdk....vvitksAleklee
#MATCH +l p+vf+apir+d++h ++++ ++nkrq +a ++ +++++s++ ++++ G+++AR++++ +++rgG+++ ++k++r+++ k+n ++r+A +sa++a+a ++++l+++ + ++ ++ktkeav++lk++g+ +++++L+v+ e d+++v+a rn+pgve+++v +ln+++l++g++ v++t++A+ kl++
#PP 67.9****************************9988*******5..****..************************************************************************85544...44455669999999*************88888888889889999999999999999999******96.**********************************************986
#SEQ PL-PAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEkAGHQTSAE--SWGT--GRAVARIPRVGgggtgrsgqgafGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGhrveK---IPeiplvvstdlesIQKTKEAVAALKAVGAhsdllkvlkskklragkgkyrnrrwtQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGAHlgrfVIWTEAAFTKLDQ
#CS E--HHHHSS---HHHHHHHHHHHH-XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXX.X-HHHHHHHHHHHHHHHHHHHHHHHTT-EEEES....---.-S............S--HHHHHHHHHHTT-..........................TTS-EEEEE---SHHHHHHHTT-TTEEEEE-----HHHHHHSSE....EEEEHHHHHHHHH
4ukv_F 272 348 271 351 PF14374.1 Ribos_L4_asso_C Domain 2 77 80 101.3 1.9e-29 1 No_clan
#HMM gynLprpkmanaDlsRlinSdeiqsvlrapkkkakrk..avqkkNPLkNlkallrLNPyAkvarreallaekkrkkak
#MATCH gy+Lp+++++++D++R+inS+eiqs++r p+++a++k +v+kkNPLkN+++llrLNPyAkv+++e+l+++k++k+ +
#PP 8***************************.6666665559*******************************99987665
#SEQ GYTLPSHIISTSDVTRIINSSEIQSAIR-PAGQATQKrtHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGT
4ukv_G 25 172 25 172 PF00861.17 Ribosomal_L18p Family 1 119 119 156.6 2.6e-46 1 CL0267
#HMM kktrrrarkrlvvqrknkgttekpRLvVrrsnkhiyaQiiddtkegdlvlasalskelkkyglkvgltntaaAklvGlllAkralk........kgi.....................avlvfdlggttyggrvfalakgareaGLki
#MATCH +kt++++rkrlv+q+k+k++t+k+RLvVr++nk+i++Qii++t++gd+vla+a+s+el++yg+++gltn+aaA+++Gll+A+r+l+ kg+ +l+++l++tt+g+rvf+++kga+++GL +
#PP 599***********************************************************************************88888888666999999*******************************************75
#SEQ GKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQklgldetyKGVeevegeyelteavedgprpfkVFLDIGLQRTTTGARVFGALKGASDGGLYV
#CS SSCCCCTCHHHCCCCCCCCCSSSSCEEEEECSSCEEEEEEEECSTSEEEEEEEESTTTCCCTS-STTTSHHHHHHHHHHHHHHHHH........TSS.....................SEEEBTSST-SSTSCCHHHHHHHHHCC-B-
4ukv_G 192 288 191 288 PF14204.1 Ribosomal_L18_c Domain 2 94 94 111.5 2e-32 1 No_clan
#HMM evhrkrIfgkhvaeYmkeLkeedeekYkkqFskYikkgieaddleelykkahaaIradPsakkke....kkekkaeskrvkkkkltkeqrkervkek
#MATCH e +r++Ifg+hv++Ym+eL+++dee++++ F+ Y++++i+ad+le++y++ah+aIradP++k++e k++++aesk+++++kl+ke+r +rv++k
#PP 889**********************************************************9999788888999999*****************986
#SEQ ELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEkkftKEQYAAESKKYRQTKLSKEERAARVAAK
#CS HHHHHHHHTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHS-------....-------HHHHS-----HHHHHHHHHHH
4ukv_H 70 112 70 114 PF01159.14 Ribosomal_L6e Family 1 44 108 55.4 5.8e-15 1 No_clan
#HMM vNgvPlrRvnqrYviaTstkvdisevdvpeklddeyFkkekkkk
#MATCH vNgvPlrRvn+rYviaTstkv +++v+v ek++ eyF+ke+ k+
#PP 7***************************.**********99655
#SEQ VNGVPLRRVNARYVIATSTKVSVEGVNV-EKFNVEYFAKEEIKA
#CS SS----EEESSSS-EE-S---S-SS---.SS---SSHHHHHHHH
4ukv_H 107 156 106 156 PF01159.14 Ribosomal_L6e Family 59 108 108 57.8 1e-15 1 No_clan
#HMM kkelkekrkadqkavDkallaaikkepelkkYLksrFslkkgdkPHklkf
#MATCH k+e+k++r +dqk vDkal+a+ikk+p lk+YL+++Fslk+gdkPH lkf
#PP 68999********************************************9
#SEQ KEEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
#CS -S-THHHHHHHHH-S---S---------THHHHHHHHHHHHTTSSSS---
4ukv_I 2 59 1 59 PF08079.7 Ribosomal_L30_N Domain 14 71 71 56.3 2.3e-15 1 No_clan
#HMM akrakkaaakkkarkkkrkeifkRAekYvkEYrakerdeirlkReAkkkGnfYvPaea
#MATCH ++ a+++aa+k+a+k+kr+ i++R +Y+kEY+ +er++i++kR+Ak++G++Yv+a++
#PP 78999***************************************************86
#SEQ EQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQH
#CS HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-SSSSHHHHHS-S---S------
4ukv_I 61 112 61 112 PF00327.15 Ribosomal_L30 Domain 1 52 52 68.9 2e-19 1 No_clan
#HMM llfiirirgiigvppkikktLqlLrLrkindavfvkdtpairgmlkkVkhlV
#MATCH l+f++ri+gi+++ppk +k+LqlLrL++in+++fvk t+a++ +lk ++++V
#PP 58*************************************************9
#SEQ LVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYV
#CS -EEEEE-S-STTS-HHHHHHHHHTT--STTEEEEE--SHHHHHHHHHHTTGE
4ukv_J 97 184 94 189 PF01248.21 Ribosomal_L7Ae Domain 4 90 95 82.4 1.2e-23 1 CL0101
#HMM eeklkkalktgklvlGlkevtkalergeaklviiAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaikdegd
#MATCH ++k ++ k+ +++Gl++v+ ++e+++aklv+iA+dv+p+e + +l+alck+++vpy +vk+k++LG+lv++k+ v+al+ + ++d
#PP 677888899999**************************************************************87666666665555
#SEQ KSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSaVAALTEVRAED
#CS HHHHHHHHHHSEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHCTHHHHHHHTTEEEEEESHHHHHHHHTTSSST.SSEEEEEESTT
4ukv_K 12 85 12 85 PF00347.18 Ribosomal_L6 Domain 1 77 77 57.9 1e-15 1 No_clan
#HMM iPvgvkvsikgnlvlvkGpkgeltreipeg.vtvkvkvedgkitvirvsgidkekvfaaligtvrslinnmikGVteg
#MATCH +P+gv+vsik ++v+v+Gp+g+lt+++++ vt++ kv+++ i+v++ +g +k+ + ++tv+sl+ nmi+GVt+g
#PP 7****************************988888.678888888888********...*****************98
#SEQ VPEGVTVSIKSRIVKVVGPRGTLTKNLKHIdVTFT-KVNNQLIKVAVHNGGRKHVA---ALRTVKSLVDNMITGVTKG
#CS ESTTEEEEEETTEEEEESSSSEEEEE-TTT.EEEEEEEETTEEEEEECEESHHHHHHHHHHHHHHHHHHHHHHHHHSC
4ukv_K 97 178 97 178 PF00347.18 Ribosomal_L6 Domain 1 77 77 49.5 4.3e-13 1 No_clan
#HMM iPvgvkvsikg.....nlvlvkGpkgeltreipegvtvkvkvedgkitvirvsgidkekv..faaligtvrslinnmikGVteg
#MATCH +P++v++ k+ ++++++G+k+++ +++++gvt++++ + +++i++sg++ e v aa +++++++ n++i+++++g
#PP 799***999999***************************77..99************************************998
#SEQ FPINVNIVEKDgakfiEVRNFLGDKKIRNVPVRDGVTIEFS--TNVKDEIVLSGNSVEDVsqNAADLQQICRVRNKDIRKFLDG
#CS ESTTEEEEEET.....TEEEEESSSSEEEEE-TTTEEEEEEEETTEEEEEECEESHHHHH..HHHHHHHHHHHHHHHHHHHHSC
4ukv_L 4 156 4 157 PF00252.13 Ribosomal_L16 Family 1 132 133 106.2 9.7e-31 1 No_clan
#HMM Pkrtkyrk.kqk.ytrieygkgvkgnklafge..............ygLvalepgritanqleaarlainrylkk..ggk...lwirvfphlpvtkkpaevrmGkGKGkpdgwvarvkpGqiifev.egnvseeeakealrraasKlPiktkiv
#MATCH P+r+ yr+ k+k y++++y+++v+ +k++ + ++Lv+ e +++++++leaar+++n+y+++ g++ l++rv+p+++++ ++++++m + Gkp+g++arv++Gqiif+v ++ +++++ e lrra++K+P+++ki+
#PP 899*.99877888***********666664444666677778*******************************8885444677********************999********************745579********************97
#SEQ PARC-YRYqKNKpYPKSRYNRAVPDSKIRIYDlgkkkatvdefplcVHLVSNELEQLSSEALEAARICANKYMTTvsGRDafhLRVRVHPFHVLRINKMQQGMRGAWGKPHGLAARVDIGQIIFSVrTKDSNKDVVVEGLRRARYKFPGQQKII
#CS -GGGSTSS.SS-.--STTT-SSSSCSTTSCCC..............EEEEESS-EEEEHHHHHHHHHHHHHHHHH..TCC...EEETT---EEEEE-SSS--SSSS-BEEEEEEEEE-TTEEEEEE.CCCH.SHHHHHHHHHHHCCSSS-EEEE
4ukv_M 2 55 2 55 PF00281.14 Ribosomal_L5 Domain 1 56 56 71.6 3.3e-20 1 No_clan
#HMM NvmevPklekivvntgvGEagenkiLekaakeleeisGQkPvitkakksiasFkir
#MATCH N+m+ k+ek+v+n++vGE+g++ L++a k+le++sGQ+Pv++ka++++++F+ir
#PP 99*********************..******************************9
#SEQ NPMRDLKIEKLVLNISVGESGDR--LTRASKVLEQLSGQTPVQSKARYTVRTFGIR
#CS SGGGSSEEEEEEEEEECTTSSCCHHHHHHHHHHHHHHSS--EEEECSSSCTTTTCS
4ukv_M 59 156 59 158 PF00673.16 Ribosomal_L5_C Domain 1 93 95 80.0 7.6e-23 1 No_clan
#HMM pigvkvTLrgekmyefLekllkvvlprirdfrglskksfDksGnfsfGikeqiifpeikydkvdgifGmditiv.............ttaktdkearallkelgip
#MATCH +i+v+vT+rg k++e+Le+ lkv + +++l+ ++f+ +Gnf+fGi+e+i++ +ikyd+++gifGmd+++v ++ +++++++ +ke+++
#PP 69*********************...8...9************************.******************99988888877776666666666.66666655
#SEQ KIAVHVTVRGPKAEEILERGLKV---K---EYQLRDRNFSATGNFGFGIDEHIDL-GIKYDPSIGIFGMDFYVVmnrpgarvtrrkrCKGTVGNSHK-TTKEDTVS
#CS B-EEBEEEECHHHHHHHHHHHHTTTTS-TT---B--S--STTTBEEE---BSTTSSS--GGGSSS--BEEEEEE.............E--SSHHHHHHHHHHHS--
4ukv_N 8 171 6 172 PF01294.13 Ribosomal_L13e Family 3 178 179 247.2 6.6e-74 1 No_clan
#HMM ilknhfkkkWqervktwfnqparkvrrrkarqkkakkiaPrPaaGalrPvvraptlkynkkvraGrGfsleelkaaGinkkfartiGiavdhrrrnrsleslqanvqrlkeyksklilfPrkakkpkagdseaeevkkatqlkgpvlPikreakrvelrkvtkeekkfkafaklrl
#MATCH ilknhf+k+Wqervk++f+q+++kv+rr+ar+ +a+kiaPrP++ lrPvvrapt+kyn+kvraGrGf+l+e+kaaG+++++artiGiavdhrr+nr++e+++anvqrlkey+sk+i+fPr++k+p eae+v++a+++ +Pi++ a++ve+r+v+++ + +af++lrl
#PP 89******************************************.*********************************************************************************.....99*******99....********************..9******7
#SEQ ILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLD-LLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGKAP-----EAEQVLSAAAT----FPIAQPATDVEARAVQDNGE--SAFRTLRL
4ukv_O 15 45 15 45 PF00467.24 KOW Family 1 32 32 19.1 0.00075 0 CL0107
#HMM kGdhVkVisGpfkGrtGkVvevdrhkvrVvve
#MATCH +G++V + G +G+ + +ve+++ k +V+++
#PP 79************************.89887
#SEQ VGRVVLIKKGQSAGKLAAIVEIIDQK-KVLID
#CS TTSEEEESSSTTTTEEEEEEEEETTTEEEEEC
4ukv_O 52 127 52 128 PF01929.12 Ribosomal_L14e Family 1 76 77 110.8 3e-32 1 No_clan
#HMM pRqvinlkrlkLtkfkvkiprgartktvkkawekadvlekwaesswakklaakkkranltDFeRFklmvakkkrnk
#MATCH pRq+inl ++ Lt+++ +prgart+tv+k+w++a v+ekwa+sswakk+a++++ra+ltDFeRF++mv++k++++
#PP 7************************************************************************997
#SEQ PRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRY
#CS EEEEEEGGGEEEEEEE-T--TT--HHHHHHHHHHHTHHHHHHHSHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHH