Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/4h6g.pdb3.pdb.hmm.txt Дата изменения: Wed Jun 19 14:52:14 2013 Дата индексирования: Fri Feb 28 22:15:21 2014 Кодировка: Поисковые слова: m 84

# pfam_scan.pl, run at Wed Jun 19 14:52:11 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/4h6g.pdb3.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

4h6g_M 1 219 1 219 PF05733.6 Tenui_N Family 3 246 246 283.7 1e-84 1 No_clan
#HMM qeiieeiskealkyitehkaeivefvneieYqgfdaakilkllkekgkgddlkkDvkklivlrltRGtgfvrnkkkkivkkksaegaeevaeLvarYglvesvgdnardaiTLsRvaalfagvtlqvvkqvsgaklavdssdldslgldylladmvpqfigLkdetlpskkeslkalldahllylllvskkinpklrkkekelltdielvksttellvialsskflteekkkagrrklleafgl
#MATCH qe++++++++a++ ++ei+++v+e++Yqgfda+++++llk++g g+d++kD+kk+ivl+ltRG nk++++++k+s+eg+++v++L+++Y+l+e g+++rd++TLsRvaa++ag t+q++ ++s ++l+v+++++d l+++y++++m+p+f+g++d++lp ++l+a+ldah+lyll++s++inp+lr+++ke e+++++t+++++a++s+f+++ek rr++l+afgl
#PP 789**********.....*****************************.*******************.....*****************************..*****************************.***********************************..********************************.....***********************....********85
#SEQ QELAIQFAAQAVD-----RNEIEQWVREFAYQGFDARRVIELLKQYG-GADWEKDAKKMIVLALTRG-----NKPRRMMMKMSKEGKATVEALINKYKLKE--GNPSRDELTLSRVAAALAGRTCQALVVLS-EWLPVTGTTMDGLSPAYPRHMMHPSFAGMVDPSLP--GDYLRAILDAHSLYLLQFSRVINPNLRGRTKE-----EVAATFTQPMNAAVNSNFISHEK----RREFLKAFGL
4h6g_N 1 219 1 219 PF05733.6 Tenui_N Family 3 246 246 283.7 1e-84 1 No_clan
#HMM qeiieeiskealkyitehkaeivefvneieYqgfdaakilkllkekgkgddlkkDvkklivlrltRGtgfvrnkkkkivkkksaegaeevaeLvarYglvesvgdnardaiTLsRvaalfagvtlqvvkqvsgaklavdssdldslgldylladmvpqfigLkdetlpskkeslkalldahllylllvskkinpklrkkekelltdielvksttellvialsskflteekkkagrrklleafgl
#MATCH qe++++++++a++ ++ei+++v+e++Yqgfda+++++llk++g g+d++kD+kk+ivl+ltRG nk++++++k+s+eg+++v++L+++Y+l+e g+++rd++TLsRvaa++ag t+q++ ++s ++l+v+++++d l+++y++++m+p+f+g++d++lp ++l+a+ldah+lyll++s++inp+lr+++ke e+++++t+++++a++s+f+++ek rr++l+afgl
#PP 789**********.....*****************************.*******************.....*****************************..*****************************.***********************************..********************************.....***********************....********85
#SEQ QELAIQFAAQAVD-----RNEIEQWVREFAYQGFDARRVIELLKQYG-GADWEKDAKKMIVLALTRG-----NKPRRMMMKMSKEGKATVEALINKYKLKE--GNPSRDELTLSRVAAALAGRTCQALVVLS-EWLPVTGTTMDGLSPAYPRHMMHPSFAGMVDPSLP--GDYLRAILDAHSLYLLQFSRVINPNLRGRTKE-----EVAATFTQPMNAAVNSNFISHEK----RREFLKAFGL
4h6g_O 1 219 1 219 PF05733.6 Tenui_N Family 3 246 246 283.7 1e-84 1 No_clan
#HMM qeiieeiskealkyitehkaeivefvneieYqgfdaakilkllkekgkgddlkkDvkklivlrltRGtgfvrnkkkkivkkksaegaeevaeLvarYglvesvgdnardaiTLsRvaalfagvtlqvvkqvsgaklavdssdldslgldylladmvpqfigLkdetlpskkeslkalldahllylllvskkinpklrkkekelltdielvksttellvialsskflteekkkagrrklleafgl
#MATCH qe++++++++a++ ++ei+++v+e++Yqgfda+++++llk++g g+d++kD+kk+ivl+ltRG nk++++++k+s+eg+++v++L+++Y+l+e g+++rd++TLsRvaa++ag t+q++ ++s ++l+v+++++d l+++y++++m+p+f+g++d++lp ++l+a+ldah+lyll++s++inp+lr+++ke e+++++t+++++a++s+f+++ek rr++l+afgl
#PP 789**********.....*****************************.*******************.....*****************************..*****************************.***********************************..********************************.....***********************....********85
#SEQ QELAIQFAAQAVD-----RNEIEQWVREFAYQGFDARRVIELLKQYG-GADWEKDAKKMIVLALTRG-----NKPRRMMMKMSKEGKATVEALINKYKLKE--GNPSRDELTLSRVAAALAGRTCQALVVLS-EWLPVTGTTMDGLSPAYPRHMMHPSFAGMVDPSLP--GDYLRAILDAHSLYLLQFSRVINPNLRGRTKE-----EVAATFTQPMNAAVNSNFISHEK----RREFLKAFGL
4h6g_P 1 219 1 219 PF05733.6 Tenui_N Family 3 246 246 283.7 1e-84 1 No_clan
#HMM qeiieeiskealkyitehkaeivefvneieYqgfdaakilkllkekgkgddlkkDvkklivlrltRGtgfvrnkkkkivkkksaegaeevaeLvarYglvesvgdnardaiTLsRvaalfagvtlqvvkqvsgaklavdssdldslgldylladmvpqfigLkdetlpskkeslkalldahllylllvskkinpklrkkekelltdielvksttellvialsskflteekkkagrrklleafgl
#MATCH qe++++++++a++ ++ei+++v+e++Yqgfda+++++llk++g g+d++kD+kk+ivl+ltRG nk++++++k+s+eg+++v++L+++Y+l+e g+++rd++TLsRvaa++ag t+q++ ++s ++l+v+++++d l+++y++++m+p+f+g++d++lp ++l+a+ldah+lyll++s++inp+lr+++ke e+++++t+++++a++s+f+++ek rr++l+afgl
#PP 789**********.....*****************************.*******************.....*****************************..*****************************.***********************************..********************************.....***********************....********85
#SEQ QELAIQFAAQAVD-----RNEIEQWVREFAYQGFDARRVIELLKQYG-GADWEKDAKKMIVLALTRG-----NKPRRMMMKMSKEGKATVEALINKYKLKE--GNPSRDELTLSRVAAALAGRTCQALVVLS-EWLPVTGTTMDGLSPAYPRHMMHPSFAGMVDPSLP--GDYLRAILDAHSLYLLQFSRVINPNLRGRTKE-----EVAATFTQPMNAAVNSNFISHEK----RREFLKAFGL
4h6g_Q 1 219 1 219 PF05733.6 Tenui_N Family 3 246 246 283.7 1e-84 1 No_clan
#HMM qeiieeiskealkyitehkaeivefvneieYqgfdaakilkllkekgkgddlkkDvkklivlrltRGtgfvrnkkkkivkkksaegaeevaeLvarYglvesvgdnardaiTLsRvaalfagvtlqvvkqvsgaklavdssdldslgldylladmvpqfigLkdetlpskkeslkalldahllylllvskkinpklrkkekelltdielvksttellvialsskflteekkkagrrklleafgl
#MATCH qe++++++++a++ ++ei+++v+e++Yqgfda+++++llk++g g+d++kD+kk+ivl+ltRG nk++++++k+s+eg+++v++L+++Y+l+e g+++rd++TLsRvaa++ag t+q++ ++s ++l+v+++++d l+++y++++m+p+f+g++d++lp ++l+a+ldah+lyll++s++inp+lr+++ke e+++++t+++++a++s+f+++ek rr++l+afgl
#PP 789**********.....*****************************.*******************.....*****************************..*****************************.***********************************..********************************.....***********************....********85
#SEQ QELAIQFAAQAVD-----RNEIEQWVREFAYQGFDARRVIELLKQYG-GADWEKDAKKMIVLALTRG-----NKPRRMMMKMSKEGKATVEALINKYKLKE--GNPSRDELTLSRVAAALAGRTCQALVVLS-EWLPVTGTTMDGLSPAYPRHMMHPSFAGMVDPSLP--GDYLRAILDAHSLYLLQFSRVINPNLRGRTKE-----EVAATFTQPMNAAVNSNFISHEK----RREFLKAFGL
4h6g_R 1 219 1 219 PF05733.6 Tenui_N Family 3 246 246 283.7 1e-84 1 No_clan
#HMM qeiieeiskealkyitehkaeivefvneieYqgfdaakilkllkekgkgddlkkDvkklivlrltRGtgfvrnkkkkivkkksaegaeevaeLvarYglvesvgdnardaiTLsRvaalfagvtlqvvkqvsgaklavdssdldslgldylladmvpqfigLkdetlpskkeslkalldahllylllvskkinpklrkkekelltdielvksttellvialsskflteekkkagrrklleafgl
#MATCH qe++++++++a++ ++ei+++v+e++Yqgfda+++++llk++g g+d++kD+kk+ivl+ltRG nk++++++k+s+eg+++v++L+++Y+l+e g+++rd++TLsRvaa++ag t+q++ ++s ++l+v+++++d l+++y++++m+p+f+g++d++lp ++l+a+ldah+lyll++s++inp+lr+++ke e+++++t+++++a++s+f+++ek rr++l+afgl
#PP 789**********.....*****************************.*******************.....*****************************..*****************************.***********************************..********************************.....***********************....********85
#SEQ QELAIQFAAQAVD-----RNEIEQWVREFAYQGFDARRVIELLKQYG-GADWEKDAKKMIVLALTRG-----NKPRRMMMKMSKEGKATVEALINKYKLKE--GNPSRDELTLSRVAAALAGRTCQALVVLS-EWLPVTGTTMDGLSPAYPRHMMHPSFAGMVDPSLP--GDYLRAILDAHSLYLLQFSRVINPNLRGRTKE-----EVAATFTQPMNAAVNSNFISHEK----RREFLKAFGL