Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.cmm.msu.ru/~moshka/Term2/Practice5/E_M3.water Дата изменения: Mon Oct 18 00:40:09 2010 Дата индексирования: Tue Oct 2 18:37:10 2012 Кодировка: Поисковые слова: mdi

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# Program: water
# Rundate: Mon 18 Oct 2010 00:40:09
# Commandline: water
# [-asequence] fdng_ecoli.fasta
# [-bsequence] fdha_metfo.fasta
# [-outfile] E_M3.water
# -gapopen 5.0
# -gapextend 0.25
# Align_format: srspair
# Report_file: E_M3.water
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: FDNG_ECOLI
# 2: FDHA_METFO
# Matrix: EBLOSUM62
# Gap_penalty: 5.0
# Extend_penalty: 0.25
#
# Length: 1054
# Identity: 295/1054 (28.0%)
# Similarity: 414/1054 (39.3%)
# Gaps: 415/1054 (39.4%)
# Score: 1122.0
#
#
#=======================================

FDNG_ECOLI 1 MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAKEIRNT- 49
||: | :.| |
FDHA_METFO 1 MDI------K---------------YVP--------------------TI 9

FDNG_ECOLI 50 CTYCSVGCGL-LMYSLGDGAKNAREAIYHIEGDP--DHPVSRGALCPKGA 96
|.||.||||: |: .|: |.:..:| | .|||:.|.|||||.
FDHA_METFO 10 CPYCGVGCGMNLV------VKD--EKVVGVE--PWKRHPVNEGKLCPKGN 49

FDNG_ECOLI 97 GLLDYVNSENRLRYP------EYRAPGSDKWQRISWEEAFSRIA-KLMKA 139
...:.::.|:||..| |:| ..:|:||:..|| ||...
FDHA_METFO 50 FCYEIIHREDRLTTPLIKENGEFR--------EATWDEAYDLIASKLGAY 91

FDNG_ECOLI 140 DRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFAR-SLGMLA 188
| .|| .|..|.:.:.||...:.||||| .:|...
FDHA_METFO 92 D-------PNE----------IGFFCCARSPNENIYVNQKFARIVVGTHN 124

FDNG_ECOLI 189 VDNQARVUHGPTVASLAPTFGRGAMTNHWVDIKNANVVMVMGGNAAEAHP 238
:|:.||: ||||||.||.:||.|||||.:...::|:::..:|.|:.||||
FDHA_METFO 125 IDHCARLCHGPTVAGLAASFGSGAMTNSYASFEDADLIFSIGANSLEAHP 174

FDNG_ECOLI 239 -VGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIRSGTDITFLSGV 287
|| |..|.||.|. |..||.|||:|.||..||.|.|.::|||:..::.:
FDHA_METFO 175 LVG-RKLMRAKMNG-AYFIVADPRYTPTAKQADQYIPFKTGTDVALMNAM 222

FDNG_ECOLI 288 LRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQY-DKS 336
:..:| .:|| |.::: :|.
FDHA_METFO 223 MNVII--------------------------SEGL------EDKEFIEKR 240

FDNG_ECOLI 337 SWNYQLDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKAD 386
:.|| :| |||.||:|||::.|.|...| ||
FDHA_METFO 241 TKNY----------EE-----------LKEVVSKYTPEMAEEITQVP-AD 268

FDNG_ECOLI 387 FLKVCEVLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMG 436
.:: ::....:..|: ...:|:||.|:|:.|..|:...|.:.:|.||:|
FDHA_METFO 269 VIR--DIAIKYAKADK-AAIVYSLGITEHSHGVDNVMQTANLAMLTGNIG 315

FDNG_ECOLI 437 MAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANT 486
..|.|||.|||.:|:||..|:|.|.|..||| .|..| |..:|..|
FDHA_METFO 316 RLGTGVNPLRGQNNVQGACDMGALPTDYPGY-----RKVAD-QEVMEDVT 359

FDNG_ECOLI 487 PKATLADQVNYW--SN--------YPKFFVSLMKSFYGDAAQKENNWGYD 526
.| | |: .|:.. |||.| |
FDHA_METFO 360 --CT-------WGCSDLGCEPGLKIPEMI---------DAAAK----G-- 385

FDNG_ECOLI 527 WLPKWDQTYDV-IKYFNMMDEGKVTGYFCQGFNPVASFPDKNKVVSCLSK 575
|: :.| :||. :||.|.||.:.|...|:.
FDHA_METFO 386 ---------DLKVLY--------ITGE-----DPVISDPDTHHVEEALNN 413

FDNG_ECOLI 576 LKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDGS 625
|.:.||.|..:|:|:.| .|| | ||:.|:||::|:
FDHA_METFO 414 LDFFVVQDIFMTDTAEF-------ADV--------V--LPAACWAEQEGT 446

FDNG_ECOLI 626 IANSGRWLQWHWKGQDAPGEARNDGEI---LAGIYHHLRELYQSEGGKGV 672
..|..|.:|...|..|||||::.|.|| || ::: |.
FDHA_METFO 447 FTNGERRVQLIRKAVDAPGESKYDWEIFCDLA------KKM-------GA 483

FDNG_ECOLI 673 EPLMKMSWNYKQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSS 722
:|.| :.| |.| :|:
FDHA_METFO 484 DPEM---FTY---------ESA--------QDI----------------- 496

FDNG_ECOLI 723 FAHLRDDGTTASSCWIYTGSWTEQGNQMANRDNSD-PSGLGNTLGWAWAW 771
|..:| |.... |.| | ||:..| |..| .|
FDHA_METFO 497 FEEVR---TVTPQ---YAG--------M-NRERLDRPEAL--------HW 523

FDNG_ECOLI 772 PLNRRVLYNRASADINGKPWDPKRMLIQWNGSKWTGNDIPDFGNAAPGTP 821
|. | |: |. |||.
FDHA_METFO 524 PC-------------------P---------SE-------DH----PGTA 534

FDNG_ECOLI 822 TGPFIM------QPEGMGRLFAINKMAEGPFPEHYEPIETPLGTNPLHPN 865
:| .|:|:| :| | |. |...|:|||
FDHA_METFO 535 ----MMHIEKFAHPDGLG-IF----M---PL-EEQGPMETP--------- 562

FDNG_ECOLI 866 VVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFH-TWTKHA--LLNA 912
| :::|.:.||.||..|:| ..|:.| |...
FDHA_METFO 563 ------------D-------DEYPLILTTTRLLFHYHAAMTRRAATLDRE 593

FDNG_ECOLI 913 IAQPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNV 962
: |..:|||:...||..||.|.::|.|.|:||.|...|.||..: |
FDHA_METFO 594 V--PTGYVEINTEDAAELGIANKEKVKVKSRRGEIEIAARVTDDI----V 637

FDNG_ECOLI 963 NGQQVETVGIPIHWGFEGVARKGYIANTLTPNVG--DANSQTPEYKAFLV 1010
.| .|.||:| |...: ||.|| |.. |..|..|||||..|
FDHA_METFO 638 KG----IVNIPMH--FRECS-----ANILT-NAAAIDPKSGMPEYKACAV 675

FDNG_ECOLI 1011 NIEK 1014
.|.|
FDHA_METFO 676 AISK 679


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