SCOP family ↓
|
PDB ID 
|
protein domain
|
Kind 
|
Res, A 
|
"Histone-like" proteins from archaea
|
1c8c
|
A:
|
dna
|
1.45
|
(Uracil-5-)-methyltransferase
|
2bh2
|
A:75-432
|
rna
|
2.15
|
3-methyladenine DNA glycosylase (AAG, ANPG, MPG)
|
1ewn
|
A:
|
dna
|
2.10
|
30S ribosomal protein THX
|
2vqe
|
U:2-25
|
rna
|
2.50
|
39 kda initiator binding protein, IBP39, N-terminal domain
|
1pp7
|
U:
|
dna
|
2.45
|
5' to 3' exonuclease catalytic domain
|
1rxw
|
A:3-219
|
dna
|
2.00
|
5' to 3' exonuclease, C-terminal subdomain
|
1rxw
|
A:220-324
|
dna
|
2.00
|
A DNA-binding domain in eukaryotic transcription factors
|
1skn
|
P:
|
dna
|
2.50
|
Achaeal helicase C-terminal domain
|
2p6r
|
A:489-686
|
dna
|
3.00
|
AlkB-like
|
2fdi
|
A:15-214
|
dna
|
1.80
|
Anticodon-binding domain
|
1c0a
|
A:1-106
|
rna
|
2.40
|
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
|
1ffy
|
A:645-917
|
rna
|
2.20
|
Anticodon-binding domain of Class II aaRS
|
1h4s
|
B:277-403
|
rna
|
2.85
|
Anticodon-binding domain of PheRS
|
2iy5
|
B:682-781
|
rna
|
3.10
|
AraC type transcriptional activator
|
1bl0
|
A:9-62
|
dna
|
2.30
|
Arc/Mnt-like phage repressors
|
1bdt
|
D:
|
dna
|
2.50
|
Archaeal tRNA CCA-adding enzyme
|
1tfw
|
D:258-437
|
rna
|
2.20
|
Archaeal tRNA CCA-adding enzyme catalytic domain
|
1tfw
|
A:1-142
|
rna
|
2.20
|
Archaeal tRNA CCA-adding enzyme substrate-binding domain
|
1tfw
|
A:143-257
|
rna
|
2.20
|
Archaeosine tRNA-guanine transglycosylase, C2 domain
|
1j2b
|
B:361-505
|
rna
|
3.30
|
Arginine repressor (ArgR), N-terminal DNA-binding domain
|
2p5l
|
H:2-64
|
dna
|
2.85
|
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
|
1f7u
|
A:2-135
|
rna
|
2.20
|
ATP-dependent DNA ligase catalytic domain
|
2q2t
|
A:2-189
|
dna
|
2.30
|
ATP-dependent DNA ligase DNA-binding domain
|
1x9n
|
A:262-533
|
dna
|
3.00
|
B3/B4 domain of PheRS, PheT
|
2iy5
|
B:191-399
|
rna
|
3.10
|
Bacterial ribonucleases
|
1brn
|
M:
|
dna
|
1.76
|
Bacteriophage CII protein
|
1zs4
|
D:7-79
|
dna
|
1.70
|
Barrier-to-autointegration factor, BAF
|
2bzf
|
A:2-89
|
dna
|
2.87
|
beta-Glucosyltransferase (DNA-modifying)
|
1m5r
|
B:
|
dna
|
1.80
|
BRCA2 tower domain
|
1mje
|
A:2752-2887
|
dna
|
3.50
|
Bromoviridae-like VP
|
1cwp
|
C:
|
rna
|
3.20
|
C-terminal domain of glutamyl-tRNA synthetase (GluRS)
|
1n78
|
B:306-468
|
rna
|
2.10
|
C-terminal domain of ribosomal protein L2
|
1vqo
|
A:91-237
|
rna
|
2.20
|
C-terminal domain of RNA polymerase alpha subunit
|
1lb2
|
B:
|
dna
|
3.10
|
C-terminal fragment of elongation factor SelB
|
1wsu
|
B:575-632
|
rna
|
2.30
|
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
|
1k3x
|
A:223-262
|
dna
|
1.25
|
C5 cytosine-specific DNA methylase, DCM
|
2c7p
|
A:1-327
|
dna
|
1.70
|
cAMP-binding domain
|
1zrf
|
A:8-137
|
dna
|
2.10
|
Canonical RBD
|
2voo
|
B:105-185
|
rna
|
1.80
|
CAP C-terminal domain-like
|
3e6c
|
C:148-227
|
dna
|
1.80
|
Cell cycle transcription factor e2f-dp
|
1cf7
|
A:
|
dna
|
2.60
|
Centromere-binding
|
1hlv
|
A:1-66
|
dna
|
2.50
|
Chromosomal replication initiation factor DnaA C-terminal domain IV
|
1j1v
|
A:
|
dna
|
2.10
|
Class I aminoacyl-tRNA synthetases (RS), catalytic domain
|
1j1u
|
A:
|
rna
|
1.95
|
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
|
1c0a
|
A:421-585
|
rna
|
2.40
|
Classic zinc finger, C2H2
|
1llm
|
C:101-128
|
dna
|
1.50
|
Cold shock DNA-binding domain-like
|
2hax
|
B:1-66
|
dna
|
1.29
|
Comoviridae-like VP
|
1pgl
|
2:183-370
|
rna
|
2.80
|
CopG-like
|
1b01
|
B:
|
dna
|
2.56
|
Cryptochrome/photolyase FAD-binding domain
|
1tez
|
A:205-475
|
dna
|
1.80
|
Cryptochrome/photolyase, N-terminal domain
|
1tez
|
A:2-204
|
dna
|
1.80
|
CUT domain
|
2o4a
|
A:370-452
|
dna
|
1.75
|
Deoxycytidylate deaminase-like
|
2b3j
|
A:1-151
|
rna
|
2.00
|
DNA double-strand break repair nuclease
|
3dsc
|
A:1-333
|
dna
|
2.70
|
DNA helicase RuvA subunit, C-terminal domain
|
1c7y
|
A:155-203
|
dna
|
3.10
|
DNA helicase RuvA subunit, middle domain
|
1c7y
|
A:65-150
|
dna
|
3.10
|
DNA ligase/mRNA capping enzyme postcatalytic domain
|
2q2t
|
A:190-293
|
dna
|
2.30
|
DNA methylase TaqI, N-terminal domain
|
2ih2
|
A:21-243
|
dna
|
1.61
|
DNA polymerase beta, N-terminal domain-like
|
2fmp
|
A:10-91
|
dna
|
1.65
|
DNA polymerase beta-like
|
2bcq
|
A:386-575
|
dna
|
1.65
|
DNA polymerase beta-like, second domain
|
2bcq
|
A:329-385
|
dna
|
1.65
|
DNA polymerase I
|
2hhv
|
A:469-876
|
dna
|
1.55
|
DNA polymerase III, beta subunit
|
3bep
|
B:1-122
|
dna
|
1.92
|
DNA repair glycosylase, 2 C-terminal domains
|
1m3q
|
A:136-325
|
dna
|
1.90
|
DNA repair protein MutS, domain I
|
1wb9
|
A:2-116
|
dna
|
2.10
|
DNA repair protein MutS, domain III
|
1wb9
|
A:270-566
|
dna
|
2.10
|
DNA-binding domain from NDT80
|
1mnn
|
A:
|
dna
|
1.40
|
DNA-binding domain of intron-encoded endonucleases
|
1i3j
|
A:
|
dna
|
2.20
|
DNA-binding domain of rap1
|
1ign
|
B:360-445
|
dna
|
2.25
|
DNA-binding domain of telomeric protein
|
1w0u
|
B:
|
dna
|
1.80
|
DNA-binding N-terminal domain of transcription activators
|
1r8e
|
A:3-120
|
dna
|
2.40
|
DNA-binding protein LAG-1 (CSL)
|
3brd
|
A:197-380
|
dna
|
2.21
|
DNA-binding protein LAG-1 (CSL)
|
3brd
|
A:381-541
|
dna
|
2.21
|
DnaQ-like 3'-5' exonuclease
|
2py5
|
B:5-187
|
dna
|
1.60
|
DNase I-like
|
2dnj
|
A:
|
dna
|
2.00
|
Domains B1 and B5 of PheRS-beta, PheT
|
2iy5
|
B:152-190
|
rna
|
3.10
|
Double-stranded RNA-binding domain (dsRBD)
|
2nug
|
A:151-218
|
rna
|
1.70
|
dsRNA phage RNA-dependent RNA-polymerase
|
1uvj
|
A:
|
rna
|
1.90
|
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
|
1b23
|
P:313-405
|
rna
|
2.60
|
Elongation factors
|
1b23
|
P:213-312
|
rna
|
2.60
|
Endonuclease I
|
1oup
|
B:
|
dna
|
2.30
|
Endonuclease III
|
1orn
|
A:
|
dna
|
1.70
|
Endonuclease IV
|
1qum
|
A:
|
dna
|
1.55
|
ets domain
|
1bc8
|
C:
|
dna
|
1.93
|
Eukaryotic DNA topoisomerase I, catalytic core
|
1a31
|
A:720-765
|
dna
|
2.10
|
Eukaryotic DNA topoisomerase I, dispensable insert domain
|
1rrj
|
A:636-712
|
dna
|
2.30
|
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
|
1a31
|
A:215-430
|
dna
|
2.10
|
Eukaryotic proteases
|
1hap
|
L:
|
dna
|
2.80
|
Eukaryotic RPB5 N-terminal domain
|
2nvq
|
E:2-143
|
hybrid
|
2.90
|
Eukaryotic type KH-domain (KH-domain type I)
|
2axy
|
A:11-81
|
dna
|
1.70
|
EV matrix protein
|
1h2c
|
A:
|
rna
|
1.60
|
Excisionase-like
|
1rh6
|
B:
|
dna
|
1.70
|
Exodeoxyribonuclease V beta chain (RecC), C-terminal domain
|
1w36
|
F:818-1121
|
dna
|
3.10
|
FHV B2 protein-like
|
2az2
|
A:2-71
|
rna
|
2.60
|
Forkhead DNA-binding domain
|
2a07
|
F:503-584
|
dna
|
1.90
|
Formyltransferase
|
2fmt
|
A:1-206
|
rna
|
2.80
|
FtsK C-terminal domain-like
|
2ve9
|
A:746-808
|
dna
|
1.90
|
Fungal ribonucleases
|
1b2m
|
A:
|
rna
|
2.00
|
G proteins
|
1b23
|
P:1-212
|
rna
|
2.60
|
GAD domain
|
1c0a
|
A:288-420
|
rna
|
2.40
|
GalR/LacI-like bacterial regulator
|
1qpz
|
A:2-58
|
dna
|
2.50
|
gamma,delta resolvase, catalytic domain
|
1gdt
|
B:1-140
|
dna
|
3.00
|
GatB/GatE C-terminal domain-like
|
2d6f
|
C:445-503
|
rna
|
3.15
|
GatB/GatE catalytic domain-like
|
2d6f
|
C:396-444
|
rna
|
3.15
|
GCM domain
|
1odh
|
A:
|
dna
|
2.85
|
GerE-like (LuxR/UhpA family of transcriptional regulators)
|
1l3l
|
B:170-234
|
dna
|
1.66
|
Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
|
1qtq
|
A:339-547
|
rna
|
2.25
|
GntR-like transcriptional regulators
|
1hw2
|
B:7-78
|
dna
|
3.25
|
Group I mobile intron endonuclease
|
1t9i
|
B:
|
dna
|
1.60
|
Guide RNA binding protein gBP
|
2gje
|
D:28-173
|
rna
|
3.37
|
Heat-shock transcription factor
|
3hts
|
B:
|
dna
|
1.75
|
Hef domain-like
|
2bgw
|
A:160-229
|
dna
|
2.80
|
HLH, helix-loop-helix DNA-binding domain
|
1nkp
|
B:
|
dna
|
1.80
|
HMG-box
|
1qrv
|
A:
|
dna
|
2.20
|
HNH-motif
|
1v15
|
C:
|
dna
|
2.40
|
Homeodomain
|
1puf
|
A:
|
dna
|
1.90
|
Hut operon positive regulatory protein HutP
|
1wpu
|
B:5-148
|
rna
|
1.48
|
Ilarvirus coat protein N-terminal fragment
|
1xok
|
C:
|
rna
|
3.00
|
Intein (protein splicing domain)
|
1lwt
|
A:416-454
|
dna
|
3.20
|
Intein endonuclease
|
1lwt
|
A:181-298
|
dna
|
3.20
|
Interferon regulatory factor
|
2irf
|
J:
|
dna
|
2.20
|
Intron-encoded homing endonucleases
|
1a73
|
B:
|
dna
|
1.80
|
Iron-dependent repressor protein
|
2isz
|
D:2-64
|
dna
|
2.40
|
KorB DNA-binding domain-like
|
1r71
|
A:
|
dna
|
2.20
|
Ku70 subunit middle domain
|
1jey
|
A:254-534
|
dna
|
2.50
|
Ku80 subunit middle domain
|
1jey
|
B:242-545
|
dna
|
2.50
|
Ku80 subunit N-terminal domain
|
1jey
|
B:6-241
|
dna
|
2.50
|
L-arabinose binding protein-like
|
2pua
|
A:59-340
|
dna
|
2.90
|
L15e
|
1vq8
|
M:1-194
|
hybrid
|
2.20
|
L23p
|
1vqo
|
S:1-81
|
rna
|
2.20
|
L30e/L7ae ribosomal proteins
|
1sds
|
A:
|
rna
|
1.80
|
La domain
|
2voo
|
B:9-103
|
rna
|
1.80
|
lambda integrase N-terminal domain
|
1z1b
|
A:11-59
|
dna
|
3.80
|
Lambda integrase-like, catalytic core
|
1xo0
|
B:130-341
|
dna
|
2.00
|
lambda integrase-like, N-terminal domain
|
1xo0
|
B:20-129
|
dna
|
2.00
|
Large subunit
|
3cc2
|
1:1-56
|
rna
|
2.40
|
Lesion bypass DNA polymerase (Y-family), catalytic domain
|
1jx4
|
A:1-240
|
dna
|
1.70
|
Lesion bypass DNA polymerase (Y-family), little finger domain
|
1jx4
|
A:241-341
|
dna
|
1.70
|
Leucine zipper domain
|
1gu4
|
B:
|
dna
|
1.80
|
Lrp/AsnC-like transcriptional regulator N-terminal domain
|
2e1c
|
A:25-84
|
dna
|
2.10
|
MarR-like transcriptional regulators
|
1z9c
|
B:8-144
|
dna
|
2.64
|
Met repressor, MetJ (MetR)
|
1mjo
|
C:
|
dna
|
2.10
|
Methylated DNA-protein cysteine methyltransferase, C-terminal domain
|
1yfh
|
A:92-179
|
dna
|
3.01
|
Microviridae-like VP
|
2bpa
|
1:
|
dna
|
3.00
|
Middle domain of MutM-like DNA repair proteins
|
1k3x
|
A:125-213
|
dna
|
1.25
|
Mismatch glycosylase
|
1rrq
|
A:9-229
|
dna
|
2.22
|
mRNA cap methylase
|
1av6
|
A:
|
rna
|
2.80
|
Mug-like
|
1mwi
|
A:
|
dna
|
2.35
|
MutY C-terminal domain-like
|
1rrq
|
A:234-360
|
dna
|
2.22
|
Myb/SANT domain
|
1h8a
|
C:87-143
|
dna
|
2.23
|
N-terminal domain of MutM-like DNA repair proteins
|
1k3x
|
A:1-124
|
dna
|
1.25
|
N6 adenine-specific DNA methylase, DAM
|
1yf3
|
B:1-259
|
dna
|
2.29
|
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
|
1a3q
|
A:227-327
|
dna
|
2.10
|
Nickel responsive regulator NikR, C-terminal domain
|
2hzv
|
D:49-131
|
dna
|
3.10
|
Nodaviridae-like VP
|
2bbv
|
C:
|
rna
|
2.80
|
Nop domain
|
2ozb
|
B:85-333
|
rna
|
2.60
|
NSP3 homodimer
|
1knz
|
I:
|
rna
|
2.45
|
Nuclear receptor
|
1dsz
|
B:
|
dna
|
1.70
|
Nucleolar RNA-binding protein Nop10-like
|
2hvy
|
C:3-55
|
rna
|
2.30
|
Nucleosome core histones
|
1kx5
|
H:
|
dna
|
1.94
|
Nucleotide and nucleoside kinases
|
1rrc
|
A:1-152
|
dna
|
2.46
|
Omega transcriptional repressor
|
2bnw
|
A:23-71
|
dna
|
2.45
|
P4 origin-binding domain-like
|
1dp7
|
P:
|
dna
|
1.50
|
p53 DNA-binding domain-like
|
2ac0
|
D:96-289
|
dna
|
1.80
|
Paired domain
|
1k78
|
A:19-81
|
dna
|
2.25
|
Parvoviridae-like VP
|
4dpv
|
Z:
|
dna
|
2.90
|
PAZ domain
|
1si2
|
A:
|
hybrid
|
2.60
|
Penicillinase repressor
|
1xsd
|
A:5-126
|
dna
|
2.70
|
Phage replication organizer domain
|
2c5r
|
B:66-129
|
dna
|
2.90
|
Phage repressors
|
2r1j
|
L:3-68
|
dna
|
1.53
|
Phenylalanyl-tRNA synthetase (PheRS)
|
2iy5
|
A:15-84
|
rna
|
3.10
|
PhoB-like
|
1gxp
|
A:
|
dna
|
2.50
|
PIWI domain
|
2bgg
|
B:93-408
|
rna
|
2.20
|
Pleiotropic translational regulator Hfq
|
1kq2
|
A:
|
rna
|
2.71
|
Poly A polymerase C-terminal region-like
|
1vfg
|
A:137-351
|
rna
|
2.80
|
Poly A polymerase head domain-like
|
1vfg
|
B:1-136
|
rna
|
2.80
|
Poly(A) polymerase, PAP, C-terminal domain
|
2q66
|
A:352-529
|
rna
|
1.80
|
Poly(A) polymerase, PAP, middle domain
|
2q66
|
A:202-351
|
rna
|
1.80
|
Poly(A) polymerase, PAP, N-terminal domain
|
2q66
|
A:5-201
|
rna
|
1.80
|
Post formyltransferase domain
|
2fmt
|
A:207-314
|
rna
|
2.80
|
POU-specific domain
|
1e3o
|
C:1-75
|
dna
|
1.90
|
Prokaryotic DNA-bending protein
|
1p71
|
A:
|
dna
|
1.90
|
Prokaryotic ribosomal protein L17
|
2j01
|
R:14-118
|
rna
|
2.80
|
Prokaryotic type I DNA topoisomerase
|
1mw8
|
X:
|
dna
|
1.90
|
Prokaryotic type KH domain (KH-domain type II)
|
2asb
|
A:263-329
|
rna
|
1.50
|
Pseudouridine synthase I TruA
|
2nqp
|
C:7-270
|
rna
|
3.50
|
Pseudouridine synthase II TruB
|
1k8w
|
A:9-250
|
rna
|
1.85
|
PUA domain
|
1k8w
|
A:251-312
|
rna
|
1.85
|
Pumilio repeat
|
1m8w
|
B:
|
rna
|
2.20
|
RecG "wedge" domain
|
1gm5
|
A:106-285
|
dna
|
3.24
|
Recombinase DNA-binding domain
|
1jko
|
C:
|
dna
|
2.24
|
Recombination endonuclease VII, C-terminal and dimerization domains
|
2qnf
|
A:104-157
|
dna
|
3.00
|
Recombination endonuclease VII, N-terminal domain
|
2qnf
|
A:1-103
|
dna
|
3.00
|
Rel/Dorsal transcription factors, DNA-binding domain
|
1a3q
|
A:37-226
|
dna
|
2.10
|
Relaxase domain
|
1omh
|
A:
|
dna
|
1.95
|
Reovirus components
|
1uon
|
A:
|
rna
|
7.60
|
Replication initiation protein
|
1rep
|
C:144-246
|
dna
|
2.60
|
Replication initiation protein E1
|
1ksy
|
C:
|
dna
|
3.05
|
Replication modulator SeqA, C-terminal DNA-binding domain
|
1j3e
|
A:
|
dna
|
2.50
|
Replication protein Rep, nuclease domain
|
1uut
|
A:
|
dna
|
2.00
|
Replication terminator protein (RTP)
|
1f4k
|
B:
|
dna
|
2.50
|
Replication terminator protein (Tus)
|
2i06
|
A:5-309
|
dna
|
2.20
|
Restriction endonuclease BamHI
|
3bam
|
A:
|
dna
|
1.80
|
Restriction endonuclease BglI
|
1dmu
|
A:
|
dna
|
2.20
|
Restriction endonuclease BglII
|
1dfm
|
B:
|
dna
|
1.50
|
Restriction endonuclease BsobI
|
1dc1
|
A:
|
dna
|
1.70
|
Restriction endonuclease BstyI
|
2p0j
|
A:1-203
|
dna
|
2.10
|
Restriction endonuclease EcoO109IR
|
1wte
|
B:
|
dna
|
1.90
|
Restriction endonuclease EcoRI
|
1cl8
|
A:
|
dna
|
1.80
|
Restriction endonuclease EcoRV
|
1sx5
|
A:
|
dna
|
1.50
|
Restriction endonuclease FokI, C-terminal (catalytic) domain
|
1fok
|
A:387-579
|
dna
|
2.80
|
Restriction endonuclease FokI, N-terminal (recognition) domain
|
1fok
|
A:4-143
|
dna
|
2.80
|
Restriction endonuclease HincII
|
1tx3
|
C:2-257
|
dna
|
2.50
|
Restriction endonuclease MspI
|
1sa3
|
A:
|
dna
|
1.95
|
Restriction endonuclease MunI
|
1d02
|
A:
|
dna
|
1.70
|
Restriction endonuclease NaeI
|
1iaw
|
B:
|
dna
|
2.40
|
Restriction endonuclease NgoIV
|
1fiu
|
A:
|
dna
|
1.60
|
Restriction endonuclease PvuII
|
3pvi
|
A:
|
dna
|
1.59
|
Reverse transcriptase
|
1ztw
|
A:24-278
|
dna
|
1.80
|
Rhabdovirus nucleocapsid protein
|
2gic
|
A:2-422
|
rna
|
2.92
|
Ribonuclease A-like
|
1oj8
|
A:
|
dna
|
1.70
|
Ribonuclease H
|
2g8k
|
A:62-193
|
hybrid
|
1.65
|
Ribonuclease PH domain 1-like
|
2jea
|
B:8-155
|
rna
|
2.33
|
Ribonuclease PH domain 2-like
|
2jea
|
B:156-241
|
rna
|
2.33
|
Ribosomal L11/L12e N-terminal domain
|
1mms
|
A:8-70
|
rna
|
2.57
|
Ribosomal L27 protein
|
2zjr
|
T:2-85
|
rna
|
2.91
|
Ribosomal protein L1
|
2hw8
|
A:1-228
|
rna
|
2.10
|
Ribosomal protein L10
|
1vq8
|
G:12-73
|
hybrid
|
2.20
|
Ribosomal protein L10e
|
1vqo
|
H:1-163
|
rna
|
2.20
|
Ribosomal protein L11, C-terminal domain
|
1vq8
|
I:71-140
|
hybrid
|
2.20
|
Ribosomal protein L13
|
1vqo
|
J:4-145
|
rna
|
2.20
|
Ribosomal protein L14
|
1vq8
|
K:1-132
|
hybrid
|
2.20
|
Ribosomal protein L16p
|
2j01
|
Q:6-141
|
rna
|
2.80
|
Ribosomal protein L18 and S11
|
1vq8
|
N:1-186
|
hybrid
|
2.20
|
Ribosomal protein L19
|
2j03
|
T:1-138
|
rna
|
2.80
|
Ribosomal protein L19 (L19e)
|
1vq8
|
P:1-143
|
hybrid
|
2.20
|
Ribosomal protein L20
|
2j03
|
U:2-118
|
rna
|
2.80
|
Ribosomal protein L21p
|
2j03
|
V:1-101
|
rna
|
2.80
|
Ribosomal protein L22
|
1vqo
|
R:1-150
|
rna
|
2.20
|
Ribosomal protein L24e
|
1vqo
|
U:4-56
|
rna
|
2.20
|
Ribosomal protein L25-like
|
1dfu
|
P:
|
rna
|
1.80
|
Ribosomal protein L28
|
2j01
|
1:8-96
|
rna
|
2.80
|
Ribosomal protein L29 (L29p)
|
1vqo
|
V:1-65
|
rna
|
2.20
|
Ribosomal protein L3
|
1vq8
|
B:1-337
|
hybrid
|
2.20
|
Ribosomal protein L30p/L7e
|
1vq8
|
W:1-154
|
hybrid
|
2.20
|
Ribosomal protein L31e
|
1vq8
|
X:7-88
|
hybrid
|
2.20
|
Ribosomal protein L31p
|
2j01
|
4:1-50
|
rna
|
2.80
|
Ribosomal protein L32e
|
1vq8
|
Y:95-236
|
hybrid
|
2.20
|
Ribosomal protein L32p
|
2j03
|
5:2-60
|
rna
|
2.80
|
Ribosomal protein L33p
|
2j01
|
6:9-53
|
rna
|
2.80
|
Ribosomal protein L34p
|
2j03
|
7:1-49
|
rna
|
2.80
|
Ribosomal protein L35p
|
2j03
|
8:2-65
|
rna
|
2.80
|
Ribosomal protein L36
|
2zjr
|
4:1-37
|
rna
|
2.91
|
Ribosomal protein L37ae
|
1vq8
|
Z:10-82
|
hybrid
|
2.20
|
Ribosomal protein L37e
|
1vq8
|
1:1-56
|
hybrid
|
2.20
|
Ribosomal protein L39e
|
1vqo
|
2:1-49
|
rna
|
2.20
|
Ribosomal protein L4
|
1vq8
|
C:1-246
|
hybrid
|
2.20
|
Ribosomal protein L44e
|
1vqo
|
3:1-92
|
rna
|
2.20
|
Ribosomal protein L5
|
1vq8
|
D:10-174
|
hybrid
|
2.20
|
Ribosomal protein L6
|
1vq8
|
E:1-79
|
hybrid
|
2.20
|
Ribosomal protein L7/12, C-terminal domain
|
1yl3
|
J:58-128
|
rna
|
5.50
|
Ribosomal protein L7/12, oligomerisation (N-terminal) domain
|
1yl3
|
I:1-57
|
rna
|
5.50
|
Ribosomal protein L9 N-domain
|
2j03
|
I:1-55
|
rna
|
2.80
|
Ribosomal protein S10
|
2vqe
|
J:3-100
|
rna
|
2.50
|
Ribosomal protein S13
|
2vqe
|
M:2-126
|
rna
|
2.50
|
Ribosomal protein S14
|
2vqe
|
N:2-61
|
rna
|
2.50
|
Ribosomal protein S15
|
1g1x
|
G:
|
rna
|
2.60
|
Ribosomal protein S16
|
2j00
|
P:1-83
|
rna
|
2.80
|
Ribosomal protein S18
|
2vqe
|
R:16-88
|
rna
|
2.50
|
Ribosomal protein S19
|
2j00
|
S:4-82
|
rna
|
2.80
|
Ribosomal protein S2
|
2vqe
|
B:7-241
|
rna
|
2.50
|
Ribosomal protein S20
|
2vqe
|
T:8-106
|
rna
|
2.50
|
Ribosomal protein S21p
|
2qan
|
U:3-53
|
rna
|
3.21
|
Ribosomal protein S3 C-terminal domain
|
2j00
|
C:107-207
|
rna
|
2.80
|
Ribosomal protein S4
|
2vqe
|
D:2-209
|
rna
|
2.50
|
Ribosomal protein S6
|
2vqe
|
F:1-101
|
rna
|
2.50
|
Ribosomal protein S7
|
2vqe
|
G:2-156
|
rna
|
2.50
|
Ribosomal protein S8
|
2vqe
|
H:1-138
|
rna
|
2.50
|
Ribosomal proteins L15p and L18e
|
1vqo
|
O:1-115
|
rna
|
2.20
|
Ribosomal proteins L24p and L21e
|
1vqo
|
T:1-119
|
rna
|
2.20
|
Ribosomal S5 protein, N-terminal domain
|
2j02
|
E:5-73
|
rna
|
2.80
|
Ribosome complexes
|
3cc2
|
C:1-246
|
rna
|
2.40
|
Ribosome recycling factor, RRF
|
2qbg
|
6:1-185
|
rna
|
3.30
|
Ribotoxin
|
1jbs
|
A:
|
rna
|
1.97
|
RNA bacteriophage capsid protein
|
2bu1
|
C:1-129
|
rna
|
2.20
|
RNA polymerase
|
2vum
|
A:2-1455
|
hybrid
|
3.40
|
RNA-dependent RNA-polymerase
|
1n35
|
A:
|
rna
|
2.50
|
RNA-polymerase beta
|
2o5i
|
C:1-1119
|
hybrid
|
2.50
|
RNA-polymerase beta-prime
|
2o5i
|
D:2-1505
|
hybrid
|
2.50
|
RNase III catalytic domain-like
|
2nug
|
A:3-150
|
rna
|
1.70
|
RNase Z-like
|
2fk6
|
A:1-307
|
rna
|
2.90
|
RNB domain-like
|
2vnu
|
D:495-910
|
rna
|
2.30
|
RUNT domain
|
1h9d
|
C:
|
dna
|
2.60
|
Satellite viruses
|
1a34
|
A:
|
rna
|
1.81
|
Seryl-tRNA synthetase (SerRS)
|
1ser
|
B:501-610
|
rna
|
2.90
|
Sigma4 domain
|
1rio
|
H:
|
dna
|
2.30
|
Signal peptide-binding domain
|
1hq1
|
A:
|
rna
|
1.52
|
Signal recognition particle (SRP) complex
|
1ry1
|
W:
|
rna
|
12.00
|
Signal recognition particle alu RNA binding heterodimer, SRP9/14
|
1e8o
|
D:
|
rna
|
3.20
|
Single strand DNA-binding domain, SSB
|
1xjv
|
A:6-145
|
dna
|
1.73
|
Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
|
1oe4
|
B:
|
dna
|
2.00
|
Sm motif of small nuclear ribonucleoproteins, SNRNP
|
1m8v
|
A:
|
rna
|
2.60
|
SMAD MH1 domain
|
1ozj
|
A:
|
dna
|
2.40
|
Small protein B (SmpB)
|
2czj
|
G:4-123
|
rna
|
3.01
|
Small subunit
|
2vqe
|
E:5-154
|
rna
|
2.50
|
Spo0A
|
1lq1
|
B:
|
dna
|
2.30
|
SRA domain-like
|
2zkd
|
A:405-613
|
dna
|
1.60
|
SRF-like
|
1egw
|
A:
|
dna
|
1.50
|
SRP alpha N-terminal domain-like
|
2go5
|
1:1-129
|
rna
|
7.40
|
SRP19
|
1jid
|
A:
|
rna
|
1.80
|
STAT DNA-binding domain
|
1bg1
|
A:322-575
|
dna
|
2.25
|
T-box
|
1h6f
|
A:
|
dna
|
1.70
|
T4 endonuclease V
|
2fcc
|
A:2-138
|
dna
|
2.30
|
T7 RNA polymerase
|
1msw
|
D:
|
hybrid
|
2.10
|
Tandem AAA-ATPase domain
|
2j0s
|
A:22-243
|
rna
|
2.21
|
TaqI C-terminal domain-like
|
2ih2
|
A:244-413
|
dna
|
1.61
|
TATA-box binding protein (TBP), C-terminal domain
|
1qna
|
A:17-115
|
dna
|
1.80
|
TBP-associated factors, TAFs
|
1jfi
|
A:
|
dna
|
2.62
|
Tetracyclin repressor-like, N-terminal domain
|
1qpi
|
A:4-67
|
dna
|
2.50
|
The origin DNA-binding domain of SV40 T-antigen
|
2itl
|
B:135-249
|
dna
|
1.65
|
Thioltransferase
|
1t8e
|
B:
|
dna
|
2.54
|
Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
|
1qf6
|
A:63-241
|
rna
|
2.90
|
TMV-like viral coat proteins
|
1rmv
|
A:
|
rna
|
2.90
|
Tombusvirus P19 core protein, VP19
|
1r9f
|
A:
|
rna
|
1.85
|
Trafficking protein A-like
|
2bsq
|
F:2-66
|
dna
|
3.00
|
TRAM domain
|
2bh2
|
B:16-74
|
rna
|
2.15
|
Transcription factor IIA (TFIIA), beta-barrel domain
|
1nh2
|
C:
|
dna
|
1.90
|
Transcription factor IIB (TFIIB), core domain
|
1ais
|
B:1108-1205
|
dna
|
2.10
|
Transcriptional coactivator PC4 C-terminal domain
|
2c62
|
A:62-127
|
dna
|
1.74
|
Translational machinery components
|
2vqe
|
I:2-128
|
rna
|
2.50
|
Transposase inhibitor (Tn5 transposase)
|
1mus
|
A:
|
dna
|
1.90
|
Transposase IS200-like
|
2vjv
|
A:6-130
|
dna
|
1.90
|
tRNA-guanine transglycosylase
|
1q2r
|
A:
|
rna
|
2.90
|
tRNA-intron endonuclease catalytic domain-like
|
2gjw
|
C:63-141
|
rna
|
2.85
|
TROVE domain-like
|
1yvp
|
B:5-363
|
rna
|
2.20
|
Trp repressor, TrpR
|
1tro
|
E:
|
dna
|
1.90
|
Trp RNA-binding attenuation protein (TRAP)
|
1gtf
|
N:
|
rna
|
1.75
|
Tymoviridae-like VP
|
1ddl
|
A:
|
rna
|
2.70
|
Type II DNA topoisomerase
|
2rgr
|
A:419-1177
|
dna
|
3.00
|
Tyrosyl-DNA phosphodiesterase TDP1
|
1rff
|
A:162-350
|
dna
|
1.70
|
Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
|
1h3e
|
A:352-432
|
rna
|
2.90
|
U2A'-like
|
1a9n
|
A:
|
rna
|
2.38
|
Uracil-DNA glycosylase
|
1emh
|
A:
|
dna
|
1.80
|
V set domains (antibody variable domain-like)
|
2ok0
|
L:1-107
|
dna
|
1.89
|
ValRS/IleRS/LeuRS editing domain
|
1ffy
|
A:201-394
|
rna
|
2.20
|
Valyl-tRNA synthetase (ValRS) C-terminal domain
|
1gax
|
B:797-862
|
rna
|
2.90
|
Very short patch repair (VSR) endonuclease
|
1cw0
|
A:
|
dna
|
2.30
|
Viral DNA-binding domain
|
2bop
|
A:
|
dna
|
1.70
|
XPF/Rad1/Mus81 nuclease
|
2bgw
|
A:16-148
|
dna
|
2.80
|
Z-DNA binding domain
|
1j75
|
A:
|
dna
|
1.85
|
Zinc finger design
|
2i13
|
B:31-178
|
dna
|
1.96
|
Zn2/Cys6 DNA-binding domain
|
3coq
|
A:8-48
|
dna
|
2.40
|
|