Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/stride/1u3e.std.txt Дата изменения: Sat May 19 01:15:20 2012 Дата индексирования: Tue Oct 2 11:59:35 2012 Кодировка: Поисковые слова: m 63

REM -------------------------------------------------------------------- 1U3E
REM 1U3E
REM STRIDE: Knowledge-based secondary structure assignment 1U3E
REM Please cite: D.Frishman & P.Argos, Proteins 23, 566-579, 1995 1U3E
REM 1U3E
REM Residue accessible surface area calculation 1U3E
REM Please cite: F.Eisenhaber & P.Argos, J.Comp.Chem. 14, 1272-1280, 1993 1U3E
REM F.Eisenhaber et al., J.Comp.Chem., 1994, submitted 1U3E
REM 1U3E
REM ------------------------ General information ----------------------- 1U3E
REM 1U3E
HDR DNA BINDING PROTEIN/DNA 21-JUL-04 1U3E 1U3E
CMP MOL_ID: 1; 1U3E
CMP MOLECULE: 36-MER; 1U3E
CMP CHAIN: A; 1U3E
CMP ENGINEERED: YES; 1U3E
CMP MOL_ID: 2; 1U3E
CMP MOLECULE: 5'-D(*CP*TP*TP*AP*CP*GP*TP*GP*GP*GP*AP*AP*TP*TP*GP 1U3E
CMP *AP*GP*C)-3'; 1U3E
CMP CHAIN: B; 1U3E
CMP ENGINEERED: YES; 1U3E
CMP MOL_ID: 3; 1U3E
CMP MOLECULE: 5'-D(P*GP*TP*TP*AP*GP*GP*CP*TP*CP*AP*TP*TP*AP*CP*T 1U3E
CMP CHAIN: C; 1U3E
CMP ENGINEERED: YES; 1U3E
CMP MOL_ID: 4; 1U3E
CMP MOLECULE: HNH HOMING ENDONUCLEASE; 1U3E
CMP CHAIN: M; 1U3E
CMP ENGINEERED: YES 1U3E
SRC MOL_ID: 1; 1U3E
SRC SYNTHETIC: YES; 1U3E
SRC MOL_ID: 2; 1U3E
SRC SYNTHETIC: YES; 1U3E
SRC MOL_ID: 3; 1U3E
SRC SYNTHETIC: YES; 1U3E
SRC MOL_ID: 4; 1U3E
SRC ORGANISM_SCIENTIFIC: BACILLUS PHAGE SPO1; 1U3E
SRC ORGANISM_TAXID: 10685; 1U3E
SRC GENE: BACTERIOPHAGE SP01; 1U3E
SRC EXPRESSION_SYSTEM: ESCHERICHIA COLI; 1U3E
SRC EXPRESSION_SYSTEM_TAXID: 562; 1U3E
SRC EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+; 1U3E
SRC EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; 1U3E
SRC EXPRESSION_SYSTEM_PLASMID: PKYB1 1U3E
AUT B.W.SHEN,M.LANDTHALER,D.A.SHUB,B.L.STODDARD 1U3E
REM 1U3E
REM -------------------- Secondary structure summary ------------------- 1U3E
REM 1U3E
CHN /data/npidb/pdb/pdb_new/all/pdb1u3e.pdb M 1U3E
REM 1U3E
REM . . . . . 1U3E
SEQ 1 MEWKDIKGYEGHYQVSNTGEVYSIKSGKTLKHQIPKDGYHRIGLFKGGKG 50 1U3E
STR EEETTTTTTTEEEETTTEEEETTTT EE B TTTT EEEEEETTEE 1U3E
REM 1U3E
REM . . . . . 1U3E
SEQ 51 KTFQVHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQ 100 1U3E
STR EEEEHHHHHHHHH TTTTEEEETTTTTTTT GGGEEEE HHHHHHHH 1U3E
REM 1U3E
REM . . . . . 1U3E
SEQ 101 MSRGTLNVSKAQQIAKIKNQKPIIVISPDGIEKEYPSTKCACEELGLTRG 150 1U3E
STR HHH HHHHHHHHHHHH EEEETTTT EEEE HHHHHHHH HH 1U3E
REM 1U3E
REM . . 1U3E
SEQ 151 KVTDVLKGHRIHHKGYTFRYKLNG 174 1U3E
STR HHHHHHHTTTTTBTTBEEEE 1U3E
REM 1U3E
REM 1U3E
REM 1U3E
LOC AlphaHelix VAL 55 M PHE 63 M 1U3E
LOC AlphaHelix GLN 93 M ARG 103 M 1U3E
LOC AlphaHelix VAL 108 M ASN 119 M 1U3E
LOC AlphaHelix THR 138 M LEU 145 M 1U3E
LOC AlphaHelix ARG 149 M LYS 157 M 1U3E
LOC 310Helix SER 85 M ASN 87 M 1U3E
LOC Strand TRP 3 M ASP 5 M 1U3E
LOC Strand TYR 13 M SER 16 M 1U3E
LOC Strand GLU 20 M SER 23 M 1U3E
LOC Strand THR 29 M LEU 30 M 1U3E
LOC Strand ARG 41 M LYS 46 M 1U3E
LOC Strand LYS 49 M GLN 54 M 1U3E
LOC Strand VAL 72 M HIS 75 M 1U3E
LOC Strand LEU 88 M VAL 91 M 1U3E
LOC Strand ILE 123 M ILE 126 M 1U3E
LOC Strand GLU 132 M TYR 135 M 1U3E
LOC Strand THR 167 M TYR 170 M 1U3E
LOC TurnII ILE 6 M TYR 9 M 1U3E
LOC TurnIV LYS 7 M GLU 10 M 1U3E
LOC TurnII TYR 9 M HIS 12 M 1U3E
LOC TurnIV GLU 10 M TYR 13 M 1U3E
LOC TurnI SER 16 M GLY 19 M 1U3E
LOC TurnIV SER 23 M SER 26 M 1U3E
LOC TurnI ILE 24 M GLY 27 M 1U3E
LOC TurnI PRO 35 M GLY 38 M 1U3E
LOC TurnIV PHE 45 M GLY 48 M 1U3E
LOC TurnIV LYS 46 M LYS 49 M 1U3E
LOC TurnII GLU 68 M LEU 71 M 1U3E
LOC TurnI HIS 75 M GLY 78 M 1U3E
LOC TurnI ASN 79 M ASN 82 M 1U3E
LOC TurnVIII LYS 80 M ASN 83 M 1U3E
LOC TurnI SER 127 M GLY 130 M 1U3E
LOC TurnVIII GLY 158 M ILE 161 M 1U3E
LOC TurnIV HIS 162 M GLY 165 M 1U3E
LOC TurnI' HIS 163 M TYR 166 M 1U3E
REM 1U3E
REM --------------- Detailed secondary structure assignment------------- 1U3E
REM 1U3E
REM |---Residue---| |--Structure--| |-Phi-| |-Psi-| |-Area-| 1U3E
ASG MET M 1 1 C Coil 360.00 109.78 116.1 1U3E
ASG GLU M 2 2 C Coil -77.95 137.18 128.5 1U3E
ASG TRP M 3 3 E Strand -119.71 139.85 97.1 1U3E
ASG LYS M 4 4 E Strand -136.29 153.93 104.0 1U3E
ASG ASP M 5 5 E Strand -80.86 127.52 74.5 1U3E
ASG ILE M 6 6 T Turn -59.97 111.54 3.2 1U3E
ASG LYS M 7 7 T Turn -51.87 133.32 130.8 1U3E
ASG GLY M 8 8 T Turn 85.56 0.83 29.0 1U3E
ASG TYR M 9 9 T Turn -144.95 23.01 22.8 1U3E
ASG GLU M 10 10 T Turn -54.30 135.68 109.1 1U3E
ASG GLY M 11 11 T Turn 87.66 -10.39 52.4 1U3E
ASG HIS M 12 12 T Turn -111.25 -53.49 104.9 1U3E
ASG TYR M 13 13 E Strand -130.29 167.53 22.8 1U3E
ASG GLN M 14 14 E Strand -147.28 157.17 46.9 1U3E
ASG VAL M 15 15 E Strand -129.10 150.17 0.6 1U3E
ASG SER M 16 16 E Strand -117.47 152.72 0.0 1U3E
ASG ASN M 17 17 T Turn -63.13 -6.64 36.8 1U3E
ASG THR M 18 18 T Turn -92.96 -8.96 43.0 1U3E
ASG GLY M 19 19 T Turn 102.10 21.66 1.7 1U3E
ASG GLU M 20 20 E Strand -98.20 133.24 73.2 1U3E
ASG VAL M 21 21 E Strand -114.42 111.73 0.6 1U3E
ASG TYR M 22 22 E Strand -101.73 141.82 66.1 1U3E
ASG SER M 23 23 E Strand -104.97 145.29 8.0 1U3E
ASG ILE M 24 24 T Turn -92.55 -44.71 68.9 1U3E
ASG LYS M 25 25 T Turn -74.67 -31.72 198.4 1U3E
ASG SER M 26 26 T Turn -79.06 -14.75 70.4 1U3E
ASG GLY M 27 27 T Turn 78.58 -43.22 45.4 1U3E
ASG LYS M 28 28 C Coil -93.44 -178.49 152.0 1U3E
ASG THR M 29 29 E Strand -110.14 127.74 74.6 1U3E
ASG LEU M 30 30 E Strand -51.24 125.97 36.8 1U3E
ASG LYS M 31 31 C Coil -77.11 131.80 191.9 1U3E
ASG HIS M 32 32 C Coil -68.29 135.38 52.9 1U3E
ASG GLN M 33 33 B Bridge -92.03 129.93 92.5 1U3E
ASG ILE M 34 34 C Coil -124.45 78.89 93.5 1U3E
ASG PRO M 35 35 T Turn -54.40 -164.38 59.2 1U3E
ASG LYS M 36 36 T Turn -77.61 -33.34 217.4 1U3E
ASG ASP M 37 37 T Turn -70.81 -9.68 73.9 1U3E
ASG GLY M 38 38 T Turn 77.05 11.94 17.2 1U3E
ASG TYR M 39 39 C Coil -97.22 128.96 72.6 1U3E
ASG HIS M 40 40 C Coil -67.65 119.67 12.4 1U3E
ASG ARG M 41 41 E Strand -119.78 165.90 60.3 1U3E
ASG ILE M 42 42 E Strand -154.72 163.97 1.6 1U3E
ASG GLY M 43 43 E Strand -114.15 127.37 23.5 1U3E
ASG LEU M 44 44 E Strand -108.85 128.85 0.2 1U3E
ASG PHE M 45 45 E Strand -98.93 135.73 114.5 1U3E
ASG LYS M 46 46 E Strand -137.28 110.17 119.7 1U3E
ASG GLY M 47 47 T Turn 59.02 61.62 77.2 1U3E
ASG GLY M 48 48 T Turn 75.71 -43.37 70.8 1U3E
ASG LYS M 49 49 E Strand -88.76 127.58 172.0 1U3E
ASG GLY M 50 50 E Strand -107.26 137.77 38.0 1U3E
ASG LYS M 51 51 E Strand -113.63 153.03 135.3 1U3E
ASG THR M 52 52 E Strand -93.99 130.14 92.4 1U3E
ASG PHE M 53 53 E Strand -124.76 157.22 53.2 1U3E
ASG GLN M 54 54 E Strand -97.79 113.39 56.9 1U3E
ASG VAL M 55 55 H AlphaHelix -43.64 -44.59 0.4 1U3E
ASG HIS M 56 56 H AlphaHelix -68.92 -22.56 9.2 1U3E
ASG ARG M 57 57 H AlphaHelix -77.45 -42.32 76.2 1U3E
ASG LEU M 58 58 H AlphaHelix -58.18 -40.80 7.8 1U3E
ASG VAL M 59 59 H AlphaHelix -66.10 -57.18 0.4 1U3E
ASG ALA M 60 60 H AlphaHelix -50.86 -46.41 0.0 1U3E
ASG ILE M 61 61 H AlphaHelix -60.33 -33.58 61.0 1U3E
ASG HIS M 62 62 H AlphaHelix -96.96 -28.74 10.9 1U3E
ASG PHE M 63 63 H AlphaHelix -120.66 20.24 42.6 1U3E
ASG CYS M 64 64 C Coil -136.34 113.51 21.7 1U3E
ASG GLU M 65 65 C Coil -65.56 154.16 187.9 1U3E
ASG GLY M 66 66 C Coil 113.48 -6.83 46.0 1U3E
ASG TYR M 67 67 C Coil -62.17 129.49 119.0 1U3E
ASG GLU M 68 68 T Turn -141.77 146.87 128.5 1U3E
ASG GLU M 69 69 T Turn -50.19 140.12 174.4 1U3E
ASG GLY M 70 70 T Turn 79.41 -11.62 66.8 1U3E
ASG LEU M 71 71 T Turn -68.38 163.52 31.5 1U3E
ASG VAL M 72 72 E Strand -127.34 147.23 36.1 1U3E
ASG VAL M 73 73 E Strand -88.99 122.72 12.3 1U3E
ASG ASP M 74 74 E Strand -106.20 146.40 10.5 1U3E
ASG HIS M 75 75 E Strand -100.22 100.52 13.4 1U3E
ASG LYS M 76 76 T Turn -43.03 -53.27 116.7 1U3E
ASG ASP M 77 77 T Turn -82.91 6.57 81.3 1U3E
ASG GLY M 78 78 T Turn 70.86 -9.04 44.5 1U3E
ASG ASN M 79 79 T Turn -84.93 102.24 65.2 1U3E
ASG LYS M 80 80 T Turn -67.46 -8.98 75.1 1U3E
ASG ASP M 81 81 T Turn -90.66 -16.73 97.7 1U3E
ASG ASN M 82 82 T Turn -90.60 94.37 35.3 1U3E
ASG ASN M 83 83 T Turn -107.38 29.50 4.8 1U3E
ASG LEU M 84 84 C Coil -69.90 151.38 78.4 1U3E
ASG SER M 85 85 G 310Helix -61.46 -31.54 17.3 1U3E
ASG THR M 86 86 G 310Helix -64.63 -19.69 100.9 1U3E
ASG ASN M 87 87 G 310Helix -93.04 -7.46 11.7 1U3E
ASG LEU M 88 88 E Strand -108.74 159.45 5.2 1U3E
ASG ARG M 89 89 E Strand -168.14 140.66 93.5 1U3E
ASG TRP M 90 90 E Strand -73.68 118.69 22.0 1U3E
ASG VAL M 91 91 E Strand -130.85 165.41 8.6 1U3E
ASG THR M 92 92 C Coil -87.59 132.07 60.2 1U3E
ASG GLN M 93 93 H AlphaHelix -47.86 -28.82 123.2 1U3E
ASG LYS M 94 94 H AlphaHelix -68.51 -48.32 138.2 1U3E
ASG ILE M 95 95 H AlphaHelix -62.32 -39.59 70.6 1U3E
ASG ASN M 96 96 H AlphaHelix -61.88 -33.70 42.5 1U3E
ASG VAL M 97 97 H AlphaHelix -78.29 -42.52 50.9 1U3E
ASG GLU M 98 98 H AlphaHelix -53.39 -31.06 91.9 1U3E
ASG ASN M 99 99 H AlphaHelix -68.47 -38.02 43.4 1U3E
ASG GLN M 100 100 H AlphaHelix -65.86 -42.52 62.3 1U3E
ASG MET M 101 101 H AlphaHelix -52.75 -57.51 103.0 1U3E
ASG SER M 102 102 H AlphaHelix -52.10 -44.83 105.3 1U3E
ASG ARG M 103 103 H AlphaHelix -75.72 -7.98 130.7 1U3E
ASG GLY M 104 104 C Coil 59.83 41.15 62.9 1U3E
ASG THR M 105 105 C Coil -119.65 9.57 75.4 1U3E
ASG LEU M 106 106 C Coil -87.97 123.08 56.6 1U3E
ASG ASN M 107 107 C Coil -101.01 126.20 106.1 1U3E
ASG VAL M 108 108 H AlphaHelix -132.22 -6.57 79.4 1U3E
ASG SER M 109 109 H AlphaHelix -74.57 -30.53 68.1 1U3E
ASG LYS M 110 110 H AlphaHelix -65.57 -41.33 102.6 1U3E
ASG ALA M 111 111 H AlphaHelix -66.46 -40.51 62.2 1U3E
ASG GLN M 112 112 H AlphaHelix -62.43 -44.26 117.0 1U3E
ASG GLN M 113 113 H AlphaHelix -60.74 -34.96 118.3 1U3E
ASG ILE M 114 114 H AlphaHelix -86.12 -14.29 67.4 1U3E
ASG ALA M 115 115 H AlphaHelix -86.08 -37.50 31.4 1U3E
ASG LYS M 116 116 H AlphaHelix -56.53 -26.71 176.4 1U3E
ASG ILE M 117 117 H AlphaHelix -90.16 -53.78 107.5 1U3E
ASG LYS M 118 118 H AlphaHelix -71.70 -9.75 162.2 1U3E
ASG ASN M 119 119 H AlphaHelix -92.91 -7.63 121.5 1U3E
ASG GLN M 120 120 C Coil -70.97 134.44 82.8 1U3E
ASG LYS M 121 121 C Coil -117.38 120.27 131.0 1U3E
ASG PRO M 122 122 C Coil -65.95 135.56 55.6 1U3E
ASG ILE M 123 123 E Strand -125.76 164.50 0.0 1U3E
ASG ILE M 124 124 E Strand -120.13 126.02 41.1 1U3E
ASG VAL M 125 125 E Strand -96.51 142.95 3.2 1U3E
ASG ILE M 126 126 E Strand -122.65 118.01 35.0 1U3E
ASG SER M 127 127 T Turn -75.65 161.67 30.1 1U3E
ASG PRO M 128 128 T Turn -63.06 -26.49 97.3 1U3E
ASG ASP M 129 129 T Turn -80.69 -12.27 110.0 1U3E
ASG GLY M 130 130 T Turn 109.03 -18.40 38.2 1U3E
ASG ILE M 131 131 C Coil -71.71 138.70 115.9 1U3E
ASG GLU M 132 132 E Strand -123.45 148.25 121.6 1U3E
ASG LYS M 133 133 E Strand -140.12 141.41 128.8 1U3E
ASG GLU M 134 134 E Strand -95.68 129.49 97.6 1U3E
ASG TYR M 135 135 E Strand -116.05 155.16 23.4 1U3E
ASG PRO M 136 136 C Coil -62.32 -40.29 73.2 1U3E
ASG SER M 137 137 C Coil -146.02 162.88 11.4 1U3E
ASG THR M 138 138 H AlphaHelix -61.37 -41.56 22.6 1U3E
ASG LYS M 139 139 H AlphaHelix -54.89 -57.79 125.5 1U3E
ASG CYS M 140 140 H AlphaHelix -49.08 -48.01 36.0 1U3E
ASG ALA M 141 141 H AlphaHelix -59.40 -59.33 0.0 1U3E
ASG CYS M 142 142 H AlphaHelix -42.59 -41.00 7.5 1U3E
ASG GLU M 143 143 H AlphaHelix -69.51 -46.77 142.3 1U3E
ASG GLU M 144 144 H AlphaHelix -66.02 -39.86 125.7 1U3E
ASG LEU M 145 145 H AlphaHelix -102.71 9.19 43.1 1U3E
ASG GLY M 146 146 C Coil 56.54 61.11 46.4 1U3E
ASG LEU M 147 147 C Coil -124.46 166.03 14.9 1U3E
ASG THR M 148 148 C Coil -103.27 130.32 74.1 1U3E
ASG ARG M 149 149 H AlphaHelix -57.45 -50.02 145.4 1U3E
ASG GLY M 150 150 H AlphaHelix -49.01 -49.84 41.9 1U3E
ASG LYS M 151 151 H AlphaHelix -58.89 -59.82 65.5 1U3E
ASG VAL M 152 152 H AlphaHelix -46.66 -40.16 0.2 1U3E
ASG THR M 153 153 H AlphaHelix -65.38 -42.97 54.9 1U3E
ASG ASP M 154 154 H AlphaHelix -57.39 -42.62 40.5 1U3E
ASG VAL M 155 155 H AlphaHelix -66.09 -42.48 2.7 1U3E
ASG LEU M 156 156 H AlphaHelix -59.12 -36.56 15.0 1U3E
ASG LYS M 157 157 H AlphaHelix -85.10 -11.73 124.8 1U3E
ASG GLY M 158 158 T Turn 91.18 17.90 61.1 1U3E
ASG HIS M 159 159 T Turn -88.19 -19.98 137.3 1U3E
ASG ARG M 160 160 T Turn -142.25 143.10 130.8 1U3E
ASG ILE M 161 161 T Turn -85.61 -20.04 133.7 1U3E
ASG HIS M 162 162 T Turn -166.91 171.01 109.0 1U3E
ASG HIS M 163 163 B Bridge -153.73 126.32 22.0 1U3E
ASG LYS M 164 164 T Turn 49.23 38.51 120.7 1U3E
ASG GLY M 165 165 T Turn 85.05 -23.03 44.0 1U3E
ASG TYR M 166 166 B Bridge -90.99 174.17 55.9 1U3E
ASG THR M 167 167 E Strand -141.67 161.84 28.0 1U3E
ASG PHE M 168 168 E Strand -138.69 151.58 0.0 1U3E
ASG ARG M 169 169 E Strand -151.19 141.33 121.5 1U3E
ASG TYR M 170 170 E Strand -68.89 150.65 66.3 1U3E
ASG LYS M 171 171 C Coil -90.72 110.08 80.5 1U3E
ASG LEU M 172 172 C Coil -86.78 159.40 135.3 1U3E
ASG ASN M 173 173 C Coil 66.34 106.68 157.6 1U3E
ASG GLY M 174 174 C Coil 147.99 360.00 149.6 1U3E