Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/hmm/1xsl.pdb4.pdb.hmm.txt Дата изменения: Thu May 16 20:51:03 2013 Дата индексирования: Fri Feb 28 21:05:38 2014 Кодировка: Поисковые слова: m 63

# pfam_scan.pl, run at Thu May 16 20:51:02 2013
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jm14@sanger.ac.uk), John Tate (jt6@sanger.ac.uk),
# Rob Finn (rdf@sanger.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: /data/npidb/pdb/pdb_new/fasta/1xsl.pdb4.pdb.fas
# searching against: /mnt/databanks/pfamdata/Pfam-A.hmm, with cut off -E 0.001 --domE 0.001
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#

1xsl_M 5 70 5 70 PF14716.1 HHH_8 Domain 1 68 68 66.4 1.8e-18 1 CL0198
#HMM NkeiadaLeeladllelkgenpfrvraYrrAasaikslpeeitsleedltklpgiGkkiaakieEile
#MATCH N +i++ Le la+ + ++ ++++r++ Y++A++a+ks +++ts++e + ++pgiGk++a+ki Eile
#PP 7799**************.9************************999.9*****************97
#SEQ NLHITEKLEVLAKAYSVQ-GDKWRALGYAKAINALKSFHKPVTSYQE-ACSIPGIGKRMAEKIIEILE
#CS HHHHHHHHHHHHHHHHHH---SSCHHHHHHHHCCCCS-SS-HHHHTT.T-SSTT--HHHHHHHHHHHH
1xsl_M 87 136 87 137 PF10391.4 DNA_pol_lambd_f Domain 1 51 52 78.4 2e-22 1 CL0198
#HMM lklFtniyGvGpktArkwydeGirtLeDLkeekakLtraQqiGlkyYedlq
#MATCH l+lF+ni+G+G ktA+ wy++G+r+LeD+++ +a+Lt++Q iGlk+Y d++
#PP 689**************************99.99***************97
#SEQ LELFSNIWGAGTKTAQMWYQQGFRSLEDIRS-QASLTTQQAIGLKHYSDFL
1xsl_M 138 248 138 248 PF14792.1 DNA_pol_B_palm Domain 1 112 112 117.7 2.5e-34 1 CL0260
#HMM riPreeveelealvkkaakeldpkvevtvcGSYRRgkessGDiDilitkkdtkseskklkelleklvkklkkkgfltddLas.....geskymGvcrlpeeekkelhrRiDiklvpe
#MATCH r+Pree++e+e++v+kaa++++ ++ +++cGSYRRgk+++GD+D+lit++d++s +++++++l+++l+++gfltddL s +++ky Gvcrlp+ ++hrR+Di +vp+
#PP 9****************************************************9....68********************663333355***********9..89**********95
#SEQ RMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRS----HRGIFSRLLDSLRQEGFLTDDLVSqeengQQQKYLGVCRLPGP--GRRHRRLDIIVVPY
#CS -EEHHHHHHHHHHHHHHHHHH-TT-EEEE-HHHHTT-SEESSEEEEEEBTTCSTTTS--HHHHHHHHHHHHHTTSEEEEEEE.....-SSEEEEEEE---TSST--EEEEEEEE--G
1xsl_M 254 326 254 327 PF14791.1 DNA_pol_B_thumb Family 1 63 64 77.7 3.8e-22 1 No_clan
#HMM AllyfTGskefnrdlRrlAkkkglkLneyglfkrstge..........lvaletEeevFeaLglpyipPelRe
#MATCH AllyfTGs +fnr++R+lAk kg++L+e+ l+ + ++ ++++ tE++vF++Lglpy++P +R+
#PP 9********************************76644444555555488999*******************7
#SEQ ALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNthgckvgpgrVLPTPTEKDVFRLLGLPYREPAERD
#CS HHHHHH--HHHHHHHHHHHHHTT-EEETTEEEETT..E..........EEE-SSHHHHHHHTT-----GGGTT