Документ взят из кэша поисковой машины. Адрес оригинального документа : http://mouse.belozersky.msu.ru/npidb/data/pdb_new/x3dna/3ivk.pdb1.pdb.txt Дата изменения: Fri Mar 22 14:30:46 2013 Дата индексирования: Fri Feb 28 17:35:45 2014 Кодировка: Поисковые слова: m 106

/pdb/3ivk.pdb1.pdb
3ivk.pdb1.out
2 # duplex
47 # number of base-pairs
1 0 # explicit bp numbering/hetero atoms
438 461 0 # 1 | ...1>M:..-7_:[..U]U-----A[..A]:..19_:M<...1 0.20 0.16 2.33 8.81 -4.36
439 460 0 # 2 | ...1>M:..-6_:[..C]C-----G[..G]:..18_:M<...1 0.45 0.33 14.38 8.92 -3.16
440 459 0 # 3 | ...1>M:..-5_:[..C]C-----G[..G]:..17_:M<...1 0.79 0.15 12.51 8.80 -3.28
441 458 0 # 4 | ...1>M:..-4_:[..A]A-----U[..U]:..16_:M<...1 0.27 0.15 11.36 8.79 -1.87
442 457 0 # 5 | ...1>M:..-3_:[..G]G-----C[..C]:..15_:M<...1 0.37 0.01 17.03 8.93 -3.76
443 456 0 # 6 | ...1>M:..-2_:[..U]U-----A[..A]:..14_:M<...1 0.31 0.08 10.54 8.64 -4.00
444 455 0 # 7 | ...1>M:..-1_:[..A]A-----U[..U]:..13_:M<...1 0.49 0.02 7.20 8.53 -4.11
445 454 0 # 8 | ...1>M:...1_:[..G]G-----C[..C]:..12_:M<...1 0.24 0.19 18.68 9.01 -3.44
446 453 0 # 9 | ...1>M:...2_:[..G]G-*---A[..A]:..11_:M<...1 8.44 0.35 15.12 7.91 6.89
557 452 0 # 10 | ...1>M:.115_:[..A]A-----U[..U]:..10_:M<...1 0.95 0.42 10.51 8.59 -2.69
558 451 0 # 11 | ...1>M:.116_:[..U]U-----A[..A]:...9_:M<...1 0.20 0.09 11.37 9.08 -4.05
559 450 0 # 12 | ...1>M:.117_:[..A]A-----U[..U]:...8_:M<...1 0.54 0.25 12.84 9.00 -3.32
560 449 0 # 13 | ...1>M:.118_:[..G]G-----C[..C]:...7_:M<...1 1.01 0.51 14.59 8.86 -2.24
561 448 9 # 14 x ...1>M:.119_:[..U]U-----A[..A]:...6_:M<...1 0.71 0.28 11.01 8.55 -3.19
486 482 0 # 15 | ...1>M:..44_:[..G]G-----C[..C]:..40_:M<...1 0.53 0.06 2.83 8.90 -4.21
519 481 0 # 16 | ...1>M:..77_:[..G]G-----C[..C]:..39_:M<...1 0.80 0.39 6.83 8.95 -3.08
520 480 0 # 17 | ...1>M:..78_:[..G]G-----C[..C]:..38_:M<...1 0.84 0.16 8.68 8.90 -3.41
521 479 0 # 18 | ...1>M:..79_:[..C]C-----G[..G]:..37_:M<...1 0.49 0.24 7.10 9.08 -3.68
522 478 0 # 19 | ...1>M:..80_:[..A]A-----U[..U]:..36_:M<...1 1.25 0.07 8.49 8.96 -0.19
523 477 0 # 20 | ...1>M:..81_:[..G]G-----C[..C]:..35_:M<...1 0.51 0.46 3.34 8.96 -3.40
524 517 0 # 21 | ...1>M:..82_:[..C]C-----G[..G]:..75_:M<...1 0.39 0.23 17.17 8.75 -3.29
525 516 0 # 22 | ...1>M:..83_:[..C]C-----G[..G]:..74_:M<...1 0.34 0.33 2.99 9.04 -3.86
526 515 0 # 23 | ...1>M:..84_:[..U]U-----A[..A]:..73_:M<...1 0.46 0.16 11.15 8.57 -3.67
527 514 0 # 24 | ...1>M:..85_:[..C]C-----G[..G]:..72_:M<...1 0.63 0.28 14.26 8.70 -3.08
528 547 0 # 25 | ...1>M:..86_:[..C]C-----G[..G]:.105_:M<...1 0.48 0.06 10.82 8.86 -3.85
529 546 0 # 26 | ...1>M:..87_:[..G]G-----C[..C]:.104_:M<...1 0.53 0.37 35.64 8.74 -1.94
530 545 0 # 27 | ...1>M:..88_:[..G]G-*---A[..A]:.103_:M<...1 1.68 0.61 22.68 10.85 1.04
531 544 0 # 28 | ...1>M:..89_:[..U]U-----A[..A]:.102_:M<...1 0.52 0.26 17.36 8.87 -3.10
532 543 0 # 29 | ...1>M:..90_:[..G]G-----C[..C]:.101_:M<...1 0.46 0.29 10.12 8.87 -3.45
533 542 0 # 30 | ...1>M:..91_:[..G]G-----C[..C]:.100_:M<...1 0.48 0.44 12.79 8.87 -3.01
534 541 0 # 31 | ...1>M:..92_:[..G]G-----C[..C]:..99_:M<...1 0.50 0.22 18.61 9.07 -3.13
535 540 0 # 32 | ...1>M:..93_:[..U]U-*---A[..A]:..98_:M<...1 6.20 0.42 18.57 9.18 7.98
536 538 9 # 33 x ...1>M:..94_:[..U]U-*---A[..A]:..96_:M<...1 10.85 0.56 25.57 6.10 12.25
488 555 0 # 34 | ...1>M:..46_:[..G]G-----C[..C]:.113_:M<...1 1.73 0.96 24.34 9.45 1.87
490 554 0 # 35 | ...1>M:..48_:[..U]U-----A[..A]:.112_:M<...1 0.50 0.24 13.77 8.92 -3.32
491 553 0 # 36 | ...1>M:..49_:[..U]U-----A[..A]:.111_:M<...1 0.46 0.24 3.15 9.16 -3.91
492 552 0 # 37 | ...1>M:..50_:[..G]G-----C[..C]:.110_:M<...1 1.36 1.30 29.65 8.76 0.45
493 551 0 # 38 | ...1>M:..51_:[..A]A-----U[..U]:.109_:M<...1 0.85 0.44 3.00 9.06 -1.13
494 550 0 # 39 | ...1>M:..52_:[..G]G-----C[..C]:.108_:M<...1 0.51 0.10 11.56 9.03 -3.71
495 549 0 # 40 | ...1>M:..53_:[..A]A-----U[..U]:.107_:M<...1 0.46 0.32 7.14 8.75 -3.54
496 548 0 # 41 | ...1>M:..54_:[..A]A-----U[..U]:.106_:M<...1 0.69 0.56 11.31 8.42 -0.63
497 511 0 # 42 | ...1>M:..55_:[..C]C-----G[..G]:..69_:M<...1 0.49 0.41 13.25 8.91 -3.03
498 510 0 # 43 | ...1>M:..56_:[..A]A-----U[..U]:..68_:M<...1 0.66 0.43 17.75 8.80 -2.60
499 509 0 # 44 | ...1>M:..57_:[..U]U-----A[..A]:..67_:M<...1 0.34 0.06 17.11 8.96 -3.69
500 508 0 # 45 | ...1>M:..58_:[..C]C-----G[..G]:..66_:M<...1 0.41 0.10 11.20 8.89 -3.84
501 507 0 # 46 | ...1>M:..59_:[..G]G-----C[..C]:..65_:M<...1 0.32 0.00 23.86 8.98 -3.49
503 506 0 # 47 | ...1>M:..61_:[..A]A-**+-A[..A]:..64_:M<...1 5.07 1.24 41.30 9.02 8.62
##### Base-pair criteria used: 4.00 0.00 15.00 2.50 65.00 4.50 7.50 [ O N]
##### 5 non-Watson-Crick base-pairs, and 3 helices (0 isolated bps)
##### Helix #1 (14): 1 - 14 ***broken O3'[i] to P[i+1] linkage***
##### Helix #2 (19): 15 - 33 ***broken O3'[i] to P[i+1] linkage***
##### Helix #3 (14): 34 - 47 ***broken O3'[i] to P[i+1] linkage***